Strain Fitness in Escherichia coli ECOR38 around HEPCGN_05335

Experiment: Bas18

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntchbC and chbA are separated by 50 nucleotideschbA and chbR are separated by 10 nucleotideschbR and celF are separated by 103 nucleotides HEPCGN_05330: chbC - PTS N,N'-diacetylchitobiose transporter subunit IIC, at 940,597 to 941,955 chbC HEPCGN_05335: chbA - PTS N,N'-diacetylchitobiose transporter subunit IIA, at 942,006 to 942,356 chbA HEPCGN_05340: chbR - transcriptional regulator ChbR, at 942,367 to 943,206 chbR HEPCGN_05345: celF - 6-phospho-beta-glucosidase, at 943,310 to 944,662 celF Position (kb) 942 943Strain fitness (log2 ratio) -1 0 1at 941.040 kb on + strand, within chbCat 941.220 kb on + strand, within chbCat 941.256 kb on + strand, within chbCat 941.305 kb on + strand, within chbCat 941.529 kb on - strand, within chbCat 941.726 kb on - strand, within chbCat 941.736 kb on + strand, within chbCat 942.006 kb on - strandat 942.077 kb on + strand, within chbAat 942.077 kb on + strand, within chbAat 942.077 kb on + strand, within chbAat 942.242 kb on + strand, within chbAat 942.287 kb on - strand, within chbAat 942.325 kb on + strandat 942.527 kb on - strand, within chbRat 942.654 kb on + strand, within chbRat 942.716 kb on + strand, within chbRat 942.872 kb on + strand, within chbR

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
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941,040 + chbC HEPCGN_05330 0.33 +0.7
941,220 + chbC HEPCGN_05330 0.46 -0.9
941,256 + chbC HEPCGN_05330 0.48 +0.5
941,305 + chbC HEPCGN_05330 0.52 -1.2
941,529 - chbC HEPCGN_05330 0.69 +0.6
941,726 - chbC HEPCGN_05330 0.83 +0.0
941,736 + chbC HEPCGN_05330 0.84 +1.1
942,006 - +0.2
942,077 + chbA HEPCGN_05335 0.20 -1.6
942,077 + chbA HEPCGN_05335 0.20 -1.1
942,077 + chbA HEPCGN_05335 0.20 +0.2
942,242 + chbA HEPCGN_05335 0.67 -1.6
942,287 - chbA HEPCGN_05335 0.80 -1.0
942,325 + +0.3
942,527 - chbR HEPCGN_05340 0.19 -0.0
942,654 + chbR HEPCGN_05340 0.34 +0.6
942,716 + chbR HEPCGN_05340 0.42 +1.0
942,872 + chbR HEPCGN_05340 0.60 -0.1

Or see this region's nucleotide sequence