Strain Fitness in Escherichia coli ECOR38 around HEPCGN_05165

Experiment: Bas18

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydjG and ydjF are separated by 136 nucleotidesydjF and ydjE are separated by 116 nucleotides HEPCGN_05160: ydjG - NADH-dependent methylglyoxal reductase, at 907,054 to 908,034 ydjG HEPCGN_05165: ydjF - Uncharacterized HTH-type transcriptional regulator YdjF, at 908,171 to 908,929 ydjF HEPCGN_05170: ydjE - Inner membrane metabolite transport protein YdjE, at 909,046 to 910,404 ydjE Position (kb) 908 909Strain fitness (log2 ratio) -2 -1 0 1at 907.251 kb on + strand, within ydjGat 907.295 kb on + strand, within ydjGat 907.341 kb on - strand, within ydjGat 907.369 kb on + strand, within ydjGat 907.372 kb on - strand, within ydjGat 907.438 kb on + strand, within ydjGat 907.439 kb on - strand, within ydjGat 907.450 kb on + strand, within ydjGat 907.450 kb on + strand, within ydjGat 907.450 kb on + strand, within ydjGat 907.524 kb on - strand, within ydjGat 907.524 kb on - strand, within ydjGat 907.561 kb on - strand, within ydjGat 907.628 kb on - strand, within ydjGat 907.628 kb on - strand, within ydjGat 907.670 kb on + strand, within ydjGat 907.680 kb on + strand, within ydjGat 907.776 kb on + strand, within ydjGat 907.776 kb on + strand, within ydjGat 907.892 kb on + strand, within ydjGat 907.893 kb on - strand, within ydjGat 907.920 kb on + strand, within ydjGat 907.930 kb on - strand, within ydjGat 907.979 kb on + strandat 908.032 kb on + strandat 908.032 kb on + strandat 908.036 kb on + strandat 908.037 kb on - strandat 908.327 kb on + strand, within ydjFat 908.327 kb on + strand, within ydjFat 908.327 kb on + strand, within ydjFat 909.180 kb on - strandat 909.372 kb on + strand, within ydjEat 909.372 kb on + strand, within ydjEat 909.372 kb on + strand, within ydjEat 909.376 kb on + strand, within ydjEat 909.376 kb on + strand, within ydjEat 909.376 kb on + strand, within ydjEat 909.377 kb on - strand, within ydjEat 909.440 kb on - strand, within ydjEat 909.636 kb on + strand, within ydjEat 909.847 kb on - strand, within ydjE

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
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907,251 + ydjG HEPCGN_05160 0.20 -0.2
907,295 + ydjG HEPCGN_05160 0.25 +1.0
907,341 - ydjG HEPCGN_05160 0.29 +0.5
907,369 + ydjG HEPCGN_05160 0.32 -0.4
907,372 - ydjG HEPCGN_05160 0.32 +0.6
907,438 + ydjG HEPCGN_05160 0.39 -0.4
907,439 - ydjG HEPCGN_05160 0.39 -0.0
907,450 + ydjG HEPCGN_05160 0.40 -0.5
907,450 + ydjG HEPCGN_05160 0.40 -0.4
907,450 + ydjG HEPCGN_05160 0.40 -0.7
907,524 - ydjG HEPCGN_05160 0.48 +0.2
907,524 - ydjG HEPCGN_05160 0.48 +0.2
907,561 - ydjG HEPCGN_05160 0.52 +0.5
907,628 - ydjG HEPCGN_05160 0.59 -0.4
907,628 - ydjG HEPCGN_05160 0.59 +0.3
907,670 + ydjG HEPCGN_05160 0.63 +0.6
907,680 + ydjG HEPCGN_05160 0.64 +1.4
907,776 + ydjG HEPCGN_05160 0.74 +1.1
907,776 + ydjG HEPCGN_05160 0.74 +0.5
907,892 + ydjG HEPCGN_05160 0.85 +0.2
907,893 - ydjG HEPCGN_05160 0.86 -2.0
907,920 + ydjG HEPCGN_05160 0.88 +1.5
907,930 - ydjG HEPCGN_05160 0.89 +0.3
907,979 + +0.4
908,032 + +1.4
908,032 + +0.3
908,036 + -0.8
908,037 - -0.5
908,327 + ydjF HEPCGN_05165 0.21 -1.4
908,327 + ydjF HEPCGN_05165 0.21 -0.3
908,327 + ydjF HEPCGN_05165 0.21 -0.1
909,180 - +0.3
909,372 + ydjE HEPCGN_05170 0.24 +0.5
909,372 + ydjE HEPCGN_05170 0.24 -0.1
909,372 + ydjE HEPCGN_05170 0.24 +0.0
909,376 + ydjE HEPCGN_05170 0.24 -0.5
909,376 + ydjE HEPCGN_05170 0.24 +1.1
909,376 + ydjE HEPCGN_05170 0.24 +1.0
909,377 - ydjE HEPCGN_05170 0.24 +0.7
909,440 - ydjE HEPCGN_05170 0.29 +0.3
909,636 + ydjE HEPCGN_05170 0.43 -0.0
909,847 - ydjE HEPCGN_05170 0.59 +0.7

Or see this region's nucleotide sequence