Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ftnA and yecR are separated by 171 nucleotides yecR and azuC are separated by 263 nucleotides azuC and yecJ are separated by 113 nucleotides yecJ and ftnB are separated by 78 nucleotides
HEPCGN_04465: ftnA - non-heme ferritin, at 776,726 to 777,223
ftnA
HEPCGN_04470: yecR - Uncharacterized protein YecR, at 777,395 to 777,718
yecR
HEPCGN_04475: azuC - stress response protein AzuC, at 777,982 to 778,068
azuC
HEPCGN_04480: yecJ - Uncharacterized protein YecJ, at 778,182 to 778,433
yecJ
HEPCGN_04485: ftnB - non-heme ferritin-like protein, at 778,512 to 779,015
ftnB
Position (kb) 778
779 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 777.243 kb on + strand at 777.302 kb on + strand at 777.461 kb on + strand, within yecR at 777.461 kb on + strand, within yecR at 777.462 kb on - strand, within yecR at 777.520 kb on + strand, within yecR at 777.606 kb on + strand, within yecR at 777.617 kb on - strand, within yecR at 777.622 kb on + strand, within yecR at 777.623 kb on - strand, within yecR at 777.623 kb on - strand, within yecR at 777.671 kb on - strand, within yecR at 777.671 kb on - strand, within yecR at 777.671 kb on - strand, within yecR at 777.882 kb on + strand at 777.882 kb on + strand at 777.892 kb on - strand at 777.900 kb on + strand at 777.901 kb on - strand at 777.932 kb on - strand at 777.960 kb on - strand at 778.017 kb on + strand, within azuC at 778.018 kb on - strand, within azuC at 778.021 kb on + strand, within azuC at 778.021 kb on + strand, within azuC at 778.148 kb on - strand at 778.149 kb on + strand at 778.179 kb on - strand at 778.322 kb on + strand, within yecJ at 778.335 kb on - strand, within yecJ at 778.508 kb on - strand at 778.508 kb on - strand at 778.508 kb on - strand at 778.571 kb on + strand, within ftnB at 778.571 kb on + strand, within ftnB at 778.572 kb on - strand, within ftnB at 778.704 kb on + strand, within ftnB at 778.946 kb on - strand, within ftnB at 778.946 kb on - strand, within ftnB at 779.020 kb on - strand at 779.020 kb on - strand at 779.023 kb on - strand at 779.055 kb on + strand at 779.056 kb on - strand at 779.429 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 777,243 + -0.4 777,302 + -2.5 777,461 + yecR HEPCGN_04470 0.20 -0.1 777,461 + yecR HEPCGN_04470 0.20 -0.9 777,462 - yecR HEPCGN_04470 0.21 +0.8 777,520 + yecR HEPCGN_04470 0.39 +0.7 777,606 + yecR HEPCGN_04470 0.65 -1.8 777,617 - yecR HEPCGN_04470 0.69 -0.2 777,622 + yecR HEPCGN_04470 0.70 -0.2 777,623 - yecR HEPCGN_04470 0.70 -0.3 777,623 - yecR HEPCGN_04470 0.70 +0.6 777,671 - yecR HEPCGN_04470 0.85 -0.3 777,671 - yecR HEPCGN_04470 0.85 -0.0 777,671 - yecR HEPCGN_04470 0.85 -0.4 777,882 + +0.4 777,882 + +0.4 777,892 - +0.9 777,900 + -0.4 777,901 - +0.5 777,932 - -0.3 777,960 - -0.6 778,017 + azuC HEPCGN_04475 0.40 +0.5 778,018 - azuC HEPCGN_04475 0.41 +0.8 778,021 + azuC HEPCGN_04475 0.45 -0.9 778,021 + azuC HEPCGN_04475 0.45 +0.7 778,148 - -3.3 778,149 + +0.3 778,179 - -1.2 778,322 + yecJ HEPCGN_04480 0.56 -1.7 778,335 - yecJ HEPCGN_04480 0.61 -0.5 778,508 - -1.0 778,508 - -0.5 778,508 - +1.0 778,571 + ftnB HEPCGN_04485 0.12 -0.9 778,571 + ftnB HEPCGN_04485 0.12 +2.0 778,572 - ftnB HEPCGN_04485 0.12 -0.7 778,704 + ftnB HEPCGN_04485 0.38 +0.3 778,946 - ftnB HEPCGN_04485 0.86 +0.3 778,946 - ftnB HEPCGN_04485 0.86 +0.2 779,020 - +0.2 779,020 - -0.6 779,023 - +1.0 779,055 + +0.3 779,056 - +0.0 779,429 + -0.0
Or see this region's nucleotide sequence