Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_04290 and HEPCGN_04295 are separated by 138 nucleotides HEPCGN_04295 and HEPCGN_04300 overlap by 4 nucleotides HEPCGN_04300 and HEPCGN_04305 overlap by 4 nucleotides HEPCGN_04305 and HEPCGN_04310 are separated by 2 nucleotides HEPCGN_04310 and HEPCGN_04315 overlap by 1 nucleotides
HEPCGN_04290: HEPCGN_04290 - 9-O-acetyl-N-acetylneuraminic acid deacetylase, at 751,792 to 753,672
_04290
HEPCGN_04295: HEPCGN_04295 - DUF2570 domain-containing protein, at 753,811 to 754,218
_04295
HEPCGN_04300: HEPCGN_04300 - peptidase M15, at 754,215 to 754,607
_04300
HEPCGN_04305: HEPCGN_04305 - holin, at 754,604 to 754,927
_04305
HEPCGN_04310: HEPCGN_04310 - phage tail protein, at 754,930 to 755,130
_04310
HEPCGN_04315: HEPCGN_04315 - capsid assembly protein, at 755,130 to 755,624
_04315
Position (kb) 753
754
755 Strain fitness (log2 ratio) -2
-1
0
1
2 at 752.820 kb on + strand, within HEPCGN_04290 at 752.820 kb on + strand, within HEPCGN_04290 at 752.821 kb on - strand, within HEPCGN_04290 at 752.918 kb on + strand, within HEPCGN_04290 at 752.919 kb on - strand, within HEPCGN_04290 at 752.919 kb on - strand, within HEPCGN_04290 at 753.026 kb on + strand, within HEPCGN_04290 at 753.028 kb on + strand, within HEPCGN_04290 at 753.082 kb on - strand, within HEPCGN_04290 at 753.167 kb on + strand, within HEPCGN_04290 at 753.168 kb on - strand, within HEPCGN_04290 at 753.168 kb on - strand, within HEPCGN_04290 at 753.255 kb on + strand, within HEPCGN_04290 at 753.256 kb on - strand, within HEPCGN_04290 at 753.308 kb on + strand, within HEPCGN_04290 at 753.308 kb on + strand, within HEPCGN_04290 at 753.309 kb on - strand, within HEPCGN_04290 at 753.312 kb on + strand, within HEPCGN_04290 at 753.312 kb on + strand, within HEPCGN_04290 at 753.312 kb on + strand, within HEPCGN_04290 at 753.313 kb on - strand, within HEPCGN_04290 at 753.384 kb on - strand, within HEPCGN_04290 at 753.452 kb on + strand, within HEPCGN_04290 at 753.453 kb on - strand, within HEPCGN_04290 at 753.558 kb on - strand at 753.602 kb on + strand at 753.602 kb on + strand at 753.602 kb on + strand at 753.858 kb on - strand, within HEPCGN_04295 at 753.858 kb on - strand, within HEPCGN_04295 at 753.970 kb on + strand, within HEPCGN_04295 at 753.971 kb on - strand, within HEPCGN_04295 at 754.047 kb on + strand, within HEPCGN_04295 at 754.382 kb on - strand, within HEPCGN_04300 at 754.426 kb on - strand, within HEPCGN_04300 at 754.554 kb on + strand, within HEPCGN_04300 at 754.633 kb on + strand at 754.658 kb on + strand, within HEPCGN_04305 at 754.857 kb on + strand, within HEPCGN_04305 at 754.857 kb on + strand, within HEPCGN_04305 at 754.857 kb on + strand, within HEPCGN_04305 at 754.858 kb on - strand, within HEPCGN_04305 at 754.858 kb on - strand, within HEPCGN_04305 at 755.075 kb on + strand, within HEPCGN_04310 at 755.214 kb on + strand, within HEPCGN_04315 at 755.215 kb on - strand, within HEPCGN_04315 at 755.215 kb on - strand, within HEPCGN_04315
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 752,820 + HEPCGN_04290 0.55 +2.0 752,820 + HEPCGN_04290 0.55 -0.7 752,821 - HEPCGN_04290 0.55 +0.1 752,918 + HEPCGN_04290 0.60 -0.3 752,919 - HEPCGN_04290 0.60 -1.6 752,919 - HEPCGN_04290 0.60 +0.2 753,026 + HEPCGN_04290 0.66 -0.3 753,028 + HEPCGN_04290 0.66 +0.6 753,082 - HEPCGN_04290 0.69 +0.1 753,167 + HEPCGN_04290 0.73 +0.0 753,168 - HEPCGN_04290 0.73 -1.0 753,168 - HEPCGN_04290 0.73 -0.2 753,255 + HEPCGN_04290 0.78 +0.0 753,256 - HEPCGN_04290 0.78 -1.5 753,308 + HEPCGN_04290 0.81 +0.6 753,308 + HEPCGN_04290 0.81 -0.7 753,309 - HEPCGN_04290 0.81 +0.3 753,312 + HEPCGN_04290 0.81 +0.5 753,312 + HEPCGN_04290 0.81 +0.2 753,312 + HEPCGN_04290 0.81 +1.1 753,313 - HEPCGN_04290 0.81 -1.1 753,384 - HEPCGN_04290 0.85 +0.6 753,452 + HEPCGN_04290 0.88 +0.6 753,453 - HEPCGN_04290 0.88 +1.0 753,558 - -0.9 753,602 + +2.6 753,602 + +0.3 753,602 + -1.0 753,858 - HEPCGN_04295 0.12 -2.0 753,858 - HEPCGN_04295 0.12 +0.4 753,970 + HEPCGN_04295 0.39 -2.5 753,971 - HEPCGN_04295 0.39 +0.5 754,047 + HEPCGN_04295 0.58 -1.1 754,382 - HEPCGN_04300 0.42 -0.4 754,426 - HEPCGN_04300 0.54 +2.7 754,554 + HEPCGN_04300 0.86 +1.1 754,633 + -0.0 754,658 + HEPCGN_04305 0.17 -0.2 754,857 + HEPCGN_04305 0.78 +0.6 754,857 + HEPCGN_04305 0.78 +0.4 754,857 + HEPCGN_04305 0.78 -0.4 754,858 - HEPCGN_04305 0.78 +1.5 754,858 - HEPCGN_04305 0.78 +0.4 755,075 + HEPCGN_04310 0.72 +0.7 755,214 + HEPCGN_04315 0.17 +1.5 755,215 - HEPCGN_04315 0.17 +1.6 755,215 - HEPCGN_04315 0.17 -0.0
Or see this region's nucleotide sequence