Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ldtA and Asn_trna are separated by 55 nucleotides Asn_trna and nac are separated by 326 nucleotides nac and cbl are separated by 101 nucleotides
HEPCGN_03475: ldtA - L,D-transpeptidase, at 599,911 to 600,846
ldtA
HEPCGN_03480: Asn_trna - tRNA-Asn(gtt), at 600,902 to 600,977
_trna
HEPCGN_03485: nac - nitrogen assimilation transcriptional regulator NAC, at 601,304 to 602,221
nac
HEPCGN_03490: cbl - HTH-type transcriptional regulator Cbl, at 602,323 to 603,273
cbl
Position (kb) 601
602
603 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 600.337 kb on - strand, within ldtA at 600.386 kb on - strand, within ldtA at 600.386 kb on - strand, within ldtA at 600.460 kb on + strand, within ldtA at 600.475 kb on + strand, within ldtA at 600.521 kb on + strand, within ldtA at 600.521 kb on + strand, within ldtA at 600.521 kb on + strand, within ldtA at 600.522 kb on - strand, within ldtA at 600.534 kb on + strand, within ldtA at 600.535 kb on - strand, within ldtA at 600.691 kb on + strand, within ldtA at 600.767 kb on + strand at 600.767 kb on + strand at 601.177 kb on - strand at 601.258 kb on + strand at 601.258 kb on + strand at 601.259 kb on - strand at 601.325 kb on + strand at 601.374 kb on + strand at 601.496 kb on + strand, within nac at 601.518 kb on + strand, within nac at 601.673 kb on + strand, within nac at 601.674 kb on - strand, within nac at 601.674 kb on - strand, within nac at 601.674 kb on - strand, within nac at 601.887 kb on - strand, within nac at 601.966 kb on + strand, within nac at 601.967 kb on - strand, within nac at 602.041 kb on - strand, within nac at 602.074 kb on + strand, within nac at 602.164 kb on - strand at 602.220 kb on - strand at 602.279 kb on - strand at 602.394 kb on + strand at 602.431 kb on - strand, within cbl at 602.584 kb on - strand, within cbl at 602.592 kb on + strand, within cbl at 602.639 kb on - strand, within cbl at 602.640 kb on + strand, within cbl at 602.640 kb on + strand, within cbl at 602.641 kb on - strand, within cbl at 602.700 kb on - strand, within cbl at 602.908 kb on - strand, within cbl at 602.912 kb on - strand, within cbl at 602.979 kb on + strand, within cbl at 602.984 kb on + strand, within cbl at 602.987 kb on + strand, within cbl at 603.013 kb on - strand, within cbl at 603.019 kb on + strand, within cbl at 603.047 kb on + strand, within cbl at 603.047 kb on + strand, within cbl at 603.124 kb on - strand, within cbl at 603.165 kb on + strand, within cbl at 603.169 kb on + strand, within cbl at 603.169 kb on + strand, within cbl at 603.169 kb on + strand, within cbl at 603.169 kb on + strand, within cbl at 603.169 kb on + strand, within cbl at 603.170 kb on - strand, within cbl at 603.170 kb on - strand, within cbl at 603.170 kb on - strand, within cbl
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 600,337 - ldtA HEPCGN_03475 0.46 -2.6 600,386 - ldtA HEPCGN_03475 0.51 -0.4 600,386 - ldtA HEPCGN_03475 0.51 -3.5 600,460 + ldtA HEPCGN_03475 0.59 +0.3 600,475 + ldtA HEPCGN_03475 0.60 +1.3 600,521 + ldtA HEPCGN_03475 0.65 -0.4 600,521 + ldtA HEPCGN_03475 0.65 +0.9 600,521 + ldtA HEPCGN_03475 0.65 -0.3 600,522 - ldtA HEPCGN_03475 0.65 +0.5 600,534 + ldtA HEPCGN_03475 0.67 -1.1 600,535 - ldtA HEPCGN_03475 0.67 +1.0 600,691 + ldtA HEPCGN_03475 0.83 +0.4 600,767 + +1.0 600,767 + +0.6 601,177 - -1.7 601,258 + -0.7 601,258 + -0.2 601,259 - +0.3 601,325 + -0.1 601,374 + +0.5 601,496 + nac HEPCGN_03485 0.21 -1.2 601,518 + nac HEPCGN_03485 0.23 +0.2 601,673 + nac HEPCGN_03485 0.40 -0.4 601,674 - nac HEPCGN_03485 0.40 +0.1 601,674 - nac HEPCGN_03485 0.40 -1.1 601,674 - nac HEPCGN_03485 0.40 +0.8 601,887 - nac HEPCGN_03485 0.64 -0.9 601,966 + nac HEPCGN_03485 0.72 +0.0 601,967 - nac HEPCGN_03485 0.72 -1.4 602,041 - nac HEPCGN_03485 0.80 +0.2 602,074 + nac HEPCGN_03485 0.84 -1.8 602,164 - +0.2 602,220 - +1.0 602,279 - +0.1 602,394 + -0.2 602,431 - cbl HEPCGN_03490 0.11 -1.3 602,584 - cbl HEPCGN_03490 0.27 -0.9 602,592 + cbl HEPCGN_03490 0.28 +1.4 602,639 - cbl HEPCGN_03490 0.33 -0.1 602,640 + cbl HEPCGN_03490 0.33 -1.1 602,640 + cbl HEPCGN_03490 0.33 -1.3 602,641 - cbl HEPCGN_03490 0.33 -0.7 602,700 - cbl HEPCGN_03490 0.40 +1.3 602,908 - cbl HEPCGN_03490 0.62 +1.2 602,912 - cbl HEPCGN_03490 0.62 +1.0 602,979 + cbl HEPCGN_03490 0.69 -0.6 602,984 + cbl HEPCGN_03490 0.70 -0.1 602,987 + cbl HEPCGN_03490 0.70 -0.5 603,013 - cbl HEPCGN_03490 0.73 +1.2 603,019 + cbl HEPCGN_03490 0.73 +0.2 603,047 + cbl HEPCGN_03490 0.76 +1.4 603,047 + cbl HEPCGN_03490 0.76 +0.4 603,124 - cbl HEPCGN_03490 0.84 +0.5 603,165 + cbl HEPCGN_03490 0.89 +0.9 603,169 + cbl HEPCGN_03490 0.89 -1.5 603,169 + cbl HEPCGN_03490 0.89 -0.6 603,169 + cbl HEPCGN_03490 0.89 +0.3 603,169 + cbl HEPCGN_03490 0.89 -0.5 603,169 + cbl HEPCGN_03490 0.89 -1.0 603,170 - cbl HEPCGN_03490 0.89 +0.6 603,170 - cbl HEPCGN_03490 0.89 -0.6 603,170 - cbl HEPCGN_03490 0.89 +0.5
Or see this region's nucleotide sequence