Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_02285 and HEPCGN_02290 are separated by 10 nucleotides HEPCGN_02290 and HEPCGN_02295 are separated by 1 nucleotides HEPCGN_02295 and HEPCGN_02300 overlap by 4 nucleotides HEPCGN_02300 and HEPCGN_02305 overlap by 14 nucleotides HEPCGN_02305 and HEPCGN_02310 overlap by 47 nucleotides HEPCGN_02310 and HEPCGN_02315 overlap by 11 nucleotides HEPCGN_02315 and HEPCGN_02320 are separated by 10 nucleotides
HEPCGN_02285: HEPCGN_02285 - DUF551 domain-containing protein, at 379,920 to 380,681
_02285
HEPCGN_02290: HEPCGN_02290 - hypothetical protein, at 380,692 to 380,955
_02290
HEPCGN_02295: HEPCGN_02295 - Ead/Ea22-like protein, at 380,957 to 381,493
_02295
HEPCGN_02300: HEPCGN_02300 - ead/Ea22-like family protein, at 381,490 to 382,176
_02300
HEPCGN_02305: HEPCGN_02305 - hypothetical protein, at 382,163 to 382,477
_02305
HEPCGN_02310: HEPCGN_02310 - DUF4752 domain-containing protein, at 382,431 to 382,748
_02310
HEPCGN_02315: HEPCGN_02315 - MarR family transcriptional regulator, at 382,738 to 382,986
_02315
HEPCGN_02320: HEPCGN_02320 - hypothetical protein, at 382,997 to 383,578
_02320
Position (kb) 381
382
383 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 380.490 kb on + strand, within HEPCGN_02285 at 380.490 kb on + strand, within HEPCGN_02285 at 380.490 kb on + strand, within HEPCGN_02285 at 380.490 kb on + strand, within HEPCGN_02285 at 380.490 kb on + strand, within HEPCGN_02285 at 380.491 kb on - strand, within HEPCGN_02285 at 380.491 kb on - strand, within HEPCGN_02285 at 380.491 kb on - strand, within HEPCGN_02285 at 380.491 kb on - strand, within HEPCGN_02285 at 380.491 kb on - strand, within HEPCGN_02285 at 380.491 kb on - strand, within HEPCGN_02285 at 380.491 kb on - strand, within HEPCGN_02285 at 380.494 kb on + strand, within HEPCGN_02285 at 380.670 kb on - strand at 380.670 kb on - strand at 380.686 kb on + strand at 380.755 kb on - strand, within HEPCGN_02290 at 380.834 kb on + strand, within HEPCGN_02290 at 380.840 kb on + strand, within HEPCGN_02290 at 380.840 kb on + strand, within HEPCGN_02290 at 380.955 kb on + strand at 380.991 kb on - strand at 381.042 kb on - strand, within HEPCGN_02295 at 381.157 kb on + strand, within HEPCGN_02295 at 381.158 kb on - strand, within HEPCGN_02295 at 381.158 kb on - strand, within HEPCGN_02295 at 381.169 kb on - strand, within HEPCGN_02295 at 381.276 kb on + strand, within HEPCGN_02295 at 381.277 kb on - strand, within HEPCGN_02295 at 381.379 kb on + strand, within HEPCGN_02295 at 381.395 kb on + strand, within HEPCGN_02295 at 381.422 kb on + strand, within HEPCGN_02295 at 381.423 kb on - strand, within HEPCGN_02295 at 381.477 kb on + strand at 381.481 kb on + strand at 381.532 kb on + strand at 381.559 kb on + strand, within HEPCGN_02300 at 381.616 kb on - strand, within HEPCGN_02300 at 381.617 kb on + strand, within HEPCGN_02300 at 381.617 kb on + strand, within HEPCGN_02300 at 381.623 kb on + strand, within HEPCGN_02300 at 381.655 kb on + strand, within HEPCGN_02300 at 381.656 kb on - strand, within HEPCGN_02300 at 381.722 kb on - strand, within HEPCGN_02300 at 381.778 kb on + strand, within HEPCGN_02300 at 381.778 kb on + strand, within HEPCGN_02300 at 381.778 kb on + strand, within HEPCGN_02300 at 381.811 kb on - strand, within HEPCGN_02300 at 381.839 kb on - strand, within HEPCGN_02300 at 381.980 kb on + strand, within HEPCGN_02300 at 382.079 kb on + strand, within HEPCGN_02300 at 382.101 kb on + strand, within HEPCGN_02300 at 382.104 kb on + strand, within HEPCGN_02300 at 382.104 kb on + strand, within HEPCGN_02300 at 382.105 kb on - strand, within HEPCGN_02300 at 382.105 kb on - strand, within HEPCGN_02300 at 382.106 kb on + strand, within HEPCGN_02300 at 382.107 kb on - strand, within HEPCGN_02300 at 382.260 kb on + strand, within HEPCGN_02305 at 382.261 kb on - strand, within HEPCGN_02305 at 382.286 kb on - strand, within HEPCGN_02305 at 382.393 kb on - strand, within HEPCGN_02305 at 382.441 kb on - strand at 382.498 kb on - strand, within HEPCGN_02310 at 382.506 kb on + strand, within HEPCGN_02310 at 382.509 kb on + strand, within HEPCGN_02310 at 382.728 kb on + strand at 382.761 kb on + strand at 382.787 kb on - strand, within HEPCGN_02315 at 383.033 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 380,490 + HEPCGN_02285 0.75 +1.7 380,490 + HEPCGN_02285 0.75 +0.9 380,490 + HEPCGN_02285 0.75 -1.3 380,490 + HEPCGN_02285 0.75 +0.5 380,490 + HEPCGN_02285 0.75 -0.2 380,491 - HEPCGN_02285 0.75 -0.4 380,491 - HEPCGN_02285 0.75 +2.7 380,491 - HEPCGN_02285 0.75 -0.6 380,491 - HEPCGN_02285 0.75 -0.3 380,491 - HEPCGN_02285 0.75 -1.0 380,491 - HEPCGN_02285 0.75 -0.2 380,491 - HEPCGN_02285 0.75 -1.6 380,494 + HEPCGN_02285 0.75 +0.1 380,670 - -0.6 380,670 - -3.1 380,686 + +0.1 380,755 - HEPCGN_02290 0.24 -3.8 380,834 + HEPCGN_02290 0.54 -0.6 380,840 + HEPCGN_02290 0.56 -0.4 380,840 + HEPCGN_02290 0.56 -0.8 380,955 + +1.4 380,991 - -1.6 381,042 - HEPCGN_02295 0.16 +2.1 381,157 + HEPCGN_02295 0.37 +0.2 381,158 - HEPCGN_02295 0.37 -3.5 381,158 - HEPCGN_02295 0.37 -2.4 381,169 - HEPCGN_02295 0.39 -1.4 381,276 + HEPCGN_02295 0.59 -0.2 381,277 - HEPCGN_02295 0.60 -0.7 381,379 + HEPCGN_02295 0.79 +0.7 381,395 + HEPCGN_02295 0.82 +0.5 381,422 + HEPCGN_02295 0.87 +0.1 381,423 - HEPCGN_02295 0.87 -3.3 381,477 + -1.3 381,481 + +0.7 381,532 + +0.5 381,559 + HEPCGN_02300 0.10 -0.3 381,616 - HEPCGN_02300 0.18 -0.7 381,617 + HEPCGN_02300 0.18 +0.5 381,617 + HEPCGN_02300 0.18 +0.1 381,623 + HEPCGN_02300 0.19 -0.8 381,655 + HEPCGN_02300 0.24 +0.5 381,656 - HEPCGN_02300 0.24 -3.8 381,722 - HEPCGN_02300 0.34 -3.0 381,778 + HEPCGN_02300 0.42 +0.3 381,778 + HEPCGN_02300 0.42 +0.0 381,778 + HEPCGN_02300 0.42 -0.4 381,811 - HEPCGN_02300 0.47 -3.0 381,839 - HEPCGN_02300 0.51 -1.2 381,980 + HEPCGN_02300 0.71 -0.7 382,079 + HEPCGN_02300 0.86 -1.4 382,101 + HEPCGN_02300 0.89 -0.6 382,104 + HEPCGN_02300 0.89 +0.4 382,104 + HEPCGN_02300 0.89 +0.2 382,105 - HEPCGN_02300 0.90 +0.5 382,105 - HEPCGN_02300 0.90 -3.6 382,106 + HEPCGN_02300 0.90 -1.4 382,107 - HEPCGN_02300 0.90 -1.7 382,260 + HEPCGN_02305 0.31 -0.1 382,261 - HEPCGN_02305 0.31 +0.1 382,286 - HEPCGN_02305 0.39 -1.6 382,393 - HEPCGN_02305 0.73 -0.9 382,441 - +1.1 382,498 - HEPCGN_02310 0.21 -1.7 382,506 + HEPCGN_02310 0.24 +0.7 382,509 + HEPCGN_02310 0.25 +1.9 382,728 + +2.4 382,761 + -1.9 382,787 - HEPCGN_02315 0.20 -4.0 383,033 - -3.0
Or see this region's nucleotide sequence