Strain Fitness in Escherichia coli ECOR38 around HEPCGN_02290

Experiment: Bas18

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_02280 and HEPCGN_02285 are separated by 84 nucleotidesHEPCGN_02285 and HEPCGN_02290 are separated by 10 nucleotidesHEPCGN_02290 and HEPCGN_02295 are separated by 1 nucleotidesHEPCGN_02295 and HEPCGN_02300 overlap by 4 nucleotides HEPCGN_02280: HEPCGN_02280 - hypothetical protein, at 379,593 to 379,835 _02280 HEPCGN_02285: HEPCGN_02285 - DUF551 domain-containing protein, at 379,920 to 380,681 _02285 HEPCGN_02290: HEPCGN_02290 - hypothetical protein, at 380,692 to 380,955 _02290 HEPCGN_02295: HEPCGN_02295 - Ead/Ea22-like protein, at 380,957 to 381,493 _02295 HEPCGN_02300: HEPCGN_02300 - ead/Ea22-like family protein, at 381,490 to 382,176 _02300 Position (kb) 380 381Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 379.698 kb on + strand, within HEPCGN_02280at 379.804 kb on + strand, within HEPCGN_02280at 379.804 kb on + strand, within HEPCGN_02280at 379.804 kb on + strand, within HEPCGN_02280at 379.804 kb on + strand, within HEPCGN_02280at 379.807 kb on - strand, within HEPCGN_02280at 379.901 kb on - strandat 379.961 kb on + strandat 380.036 kb on + strand, within HEPCGN_02285at 380.036 kb on + strand, within HEPCGN_02285at 380.063 kb on - strand, within HEPCGN_02285at 380.063 kb on - strand, within HEPCGN_02285at 380.069 kb on + strand, within HEPCGN_02285at 380.353 kb on + strand, within HEPCGN_02285at 380.354 kb on - strand, within HEPCGN_02285at 380.445 kb on + strand, within HEPCGN_02285at 380.489 kb on - strand, within HEPCGN_02285at 380.490 kb on + strand, within HEPCGN_02285at 380.490 kb on + strand, within HEPCGN_02285at 380.490 kb on + strand, within HEPCGN_02285at 380.490 kb on + strand, within HEPCGN_02285at 380.490 kb on + strand, within HEPCGN_02285at 380.491 kb on - strand, within HEPCGN_02285at 380.491 kb on - strand, within HEPCGN_02285at 380.491 kb on - strand, within HEPCGN_02285at 380.491 kb on - strand, within HEPCGN_02285at 380.491 kb on - strand, within HEPCGN_02285at 380.491 kb on - strand, within HEPCGN_02285at 380.491 kb on - strand, within HEPCGN_02285at 380.494 kb on + strand, within HEPCGN_02285at 380.670 kb on - strandat 380.670 kb on - strandat 380.686 kb on + strandat 380.755 kb on - strand, within HEPCGN_02290at 380.834 kb on + strand, within HEPCGN_02290at 380.840 kb on + strand, within HEPCGN_02290at 380.840 kb on + strand, within HEPCGN_02290at 380.955 kb on + strandat 380.991 kb on - strandat 381.042 kb on - strand, within HEPCGN_02295at 381.157 kb on + strand, within HEPCGN_02295at 381.158 kb on - strand, within HEPCGN_02295at 381.158 kb on - strand, within HEPCGN_02295at 381.169 kb on - strand, within HEPCGN_02295at 381.276 kb on + strand, within HEPCGN_02295at 381.277 kb on - strand, within HEPCGN_02295at 381.379 kb on + strand, within HEPCGN_02295at 381.395 kb on + strand, within HEPCGN_02295at 381.422 kb on + strand, within HEPCGN_02295at 381.423 kb on - strand, within HEPCGN_02295at 381.477 kb on + strandat 381.481 kb on + strandat 381.532 kb on + strandat 381.559 kb on + strand, within HEPCGN_02300at 381.616 kb on - strand, within HEPCGN_02300at 381.617 kb on + strand, within HEPCGN_02300at 381.617 kb on + strand, within HEPCGN_02300at 381.623 kb on + strand, within HEPCGN_02300at 381.655 kb on + strand, within HEPCGN_02300at 381.656 kb on - strand, within HEPCGN_02300at 381.722 kb on - strand, within HEPCGN_02300at 381.778 kb on + strand, within HEPCGN_02300at 381.778 kb on + strand, within HEPCGN_02300at 381.778 kb on + strand, within HEPCGN_02300at 381.811 kb on - strand, within HEPCGN_02300at 381.839 kb on - strand, within HEPCGN_02300

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
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379,698 + HEPCGN_02280 0.43 -1.2
379,804 + HEPCGN_02280 0.87 +1.3
379,804 + HEPCGN_02280 0.87 -0.3
379,804 + HEPCGN_02280 0.87 +0.5
379,804 + HEPCGN_02280 0.87 +0.5
379,807 - HEPCGN_02280 0.88 -3.2
379,901 - -0.1
379,961 + +0.2
380,036 + HEPCGN_02285 0.15 +0.5
380,036 + HEPCGN_02285 0.15 +0.9
380,063 - HEPCGN_02285 0.19 -2.4
380,063 - HEPCGN_02285 0.19 -1.2
380,069 + HEPCGN_02285 0.20 +0.1
380,353 + HEPCGN_02285 0.57 +3.2
380,354 - HEPCGN_02285 0.57 -2.0
380,445 + HEPCGN_02285 0.69 -0.8
380,489 - HEPCGN_02285 0.75 +0.1
380,490 + HEPCGN_02285 0.75 +1.7
380,490 + HEPCGN_02285 0.75 +0.9
380,490 + HEPCGN_02285 0.75 -1.3
380,490 + HEPCGN_02285 0.75 +0.5
380,490 + HEPCGN_02285 0.75 -0.2
380,491 - HEPCGN_02285 0.75 -0.4
380,491 - HEPCGN_02285 0.75 +2.7
380,491 - HEPCGN_02285 0.75 -0.6
380,491 - HEPCGN_02285 0.75 -0.3
380,491 - HEPCGN_02285 0.75 -1.0
380,491 - HEPCGN_02285 0.75 -0.2
380,491 - HEPCGN_02285 0.75 -1.6
380,494 + HEPCGN_02285 0.75 +0.1
380,670 - -0.6
380,670 - -3.1
380,686 + +0.1
380,755 - HEPCGN_02290 0.24 -3.8
380,834 + HEPCGN_02290 0.54 -0.6
380,840 + HEPCGN_02290 0.56 -0.4
380,840 + HEPCGN_02290 0.56 -0.8
380,955 + +1.4
380,991 - -1.6
381,042 - HEPCGN_02295 0.16 +2.1
381,157 + HEPCGN_02295 0.37 +0.2
381,158 - HEPCGN_02295 0.37 -3.5
381,158 - HEPCGN_02295 0.37 -2.4
381,169 - HEPCGN_02295 0.39 -1.4
381,276 + HEPCGN_02295 0.59 -0.2
381,277 - HEPCGN_02295 0.60 -0.7
381,379 + HEPCGN_02295 0.79 +0.7
381,395 + HEPCGN_02295 0.82 +0.5
381,422 + HEPCGN_02295 0.87 +0.1
381,423 - HEPCGN_02295 0.87 -3.3
381,477 + -1.3
381,481 + +0.7
381,532 + +0.5
381,559 + HEPCGN_02300 0.10 -0.3
381,616 - HEPCGN_02300 0.18 -0.7
381,617 + HEPCGN_02300 0.18 +0.5
381,617 + HEPCGN_02300 0.18 +0.1
381,623 + HEPCGN_02300 0.19 -0.8
381,655 + HEPCGN_02300 0.24 +0.5
381,656 - HEPCGN_02300 0.24 -3.8
381,722 - HEPCGN_02300 0.34 -3.0
381,778 + HEPCGN_02300 0.42 +0.3
381,778 + HEPCGN_02300 0.42 +0.0
381,778 + HEPCGN_02300 0.42 -0.4
381,811 - HEPCGN_02300 0.47 -3.0
381,839 - HEPCGN_02300 0.51 -1.2

Or see this region's nucleotide sequence