Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_00220 and HEPCGN_00225 are separated by 104 nucleotides HEPCGN_00225 and HEPCGN_00230 overlap by 4 nucleotides HEPCGN_00230 and HEPCGN_00235 overlap by 14 nucleotides HEPCGN_00235 and HEPCGN_00240 are separated by 453 nucleotides
HEPCGN_00220: HEPCGN_00220 - molecular chaperone DnaJ, at 13,653 to 14,168
_00220
HEPCGN_00225: HEPCGN_00225 - hypothetical protein, at 14,273 to 14,815
_00225
HEPCGN_00230: HEPCGN_00230 - hypothetical protein, at 14,812 to 15,063
_00230
HEPCGN_00235: HEPCGN_00235 - XRE family transcriptional regulator, at 15,050 to 15,277
_00235
HEPCGN_00240: HEPCGN_00240 - hypothetical protein, at 15,731 to 16,030
_00240
Position (kb) 14
15
16 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 13.823 kb on + strand, within HEPCGN_00220 at 13.872 kb on - strand, within HEPCGN_00220 at 13.897 kb on + strand, within HEPCGN_00220 at 14.196 kb on - strand at 14.198 kb on + strand at 14.198 kb on + strand at 14.201 kb on - strand at 14.251 kb on + strand at 14.251 kb on + strand at 14.252 kb on - strand at 14.252 kb on - strand at 14.295 kb on - strand at 14.295 kb on - strand at 14.417 kb on - strand, within HEPCGN_00225 at 14.641 kb on + strand, within HEPCGN_00225 at 14.647 kb on - strand, within HEPCGN_00225 at 14.773 kb on - strand at 14.938 kb on + strand, within HEPCGN_00230 at 14.939 kb on - strand, within HEPCGN_00230 at 15.296 kb on + strand at 15.296 kb on + strand at 15.297 kb on - strand at 15.297 kb on - strand at 15.297 kb on - strand at 15.301 kb on + strand at 15.301 kb on + strand at 15.302 kb on - strand at 15.323 kb on - strand at 15.705 kb on + strand at 15.705 kb on + strand at 15.806 kb on - strand, within HEPCGN_00240 at 15.837 kb on - strand, within HEPCGN_00240 at 15.837 kb on - strand, within HEPCGN_00240 at 15.837 kb on - strand, within HEPCGN_00240
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 13,823 + HEPCGN_00220 0.33 +1.1 13,872 - HEPCGN_00220 0.42 +3.8 13,897 + HEPCGN_00220 0.47 +0.2 14,196 - +0.3 14,198 + +0.1 14,198 + -0.2 14,201 - +0.5 14,251 + -0.8 14,251 + -1.2 14,252 - +0.1 14,252 - +1.6 14,295 - -0.2 14,295 - -0.4 14,417 - HEPCGN_00225 0.27 +0.2 14,641 + HEPCGN_00225 0.68 -1.2 14,647 - HEPCGN_00225 0.69 -0.1 14,773 - +1.0 14,938 + HEPCGN_00230 0.50 -0.4 14,939 - HEPCGN_00230 0.50 -4.5 15,296 + -0.1 15,296 + -0.1 15,297 - +0.6 15,297 - +0.2 15,297 - +0.4 15,301 + -0.2 15,301 + -1.3 15,302 - +0.0 15,323 - -2.0 15,705 + -0.7 15,705 + -4.2 15,806 - HEPCGN_00240 0.25 -0.1 15,837 - HEPCGN_00240 0.35 -0.9 15,837 - HEPCGN_00240 0.35 -1.3 15,837 - HEPCGN_00240 0.35 +0.4
Or see this region's nucleotide sequence