Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_26385 and ompC2 are separated by 169 nucleotides ompC2 and yddG are separated by 257 nucleotides
HEPCGN_26385: HEPCGN_26385 - leucine Rich Repeat family protein, at 4,025,818 to 4,027,077
_26385
HEPCGN_26390: ompC2 - Outer membrane porin C 2, at 4,027,247 to 4,028,347
ompC2
HEPCGN_26395: yddG - aromatic amino acid efflux DMT transporter YddG, at 4,028,605 to 4,029,429
yddG
Position (kb) 4027
4028
4029 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4026.380 kb on + strand, within HEPCGN_26385 at 4026.472 kb on - strand, within HEPCGN_26385 at 4026.781 kb on - strand, within HEPCGN_26385 at 4026.949 kb on - strand, within HEPCGN_26385 at 4027.156 kb on - strand at 4027.203 kb on + strand at 4027.257 kb on + strand at 4027.377 kb on + strand, within ompC2 at 4027.399 kb on - strand, within ompC2 at 4027.399 kb on - strand, within ompC2 at 4027.503 kb on - strand, within ompC2 at 4027.545 kb on + strand, within ompC2 at 4027.572 kb on + strand, within ompC2 at 4027.587 kb on + strand, within ompC2 at 4027.618 kb on + strand, within ompC2 at 4027.703 kb on - strand, within ompC2 at 4027.737 kb on + strand, within ompC2 at 4027.738 kb on - strand, within ompC2 at 4027.831 kb on - strand, within ompC2 at 4027.885 kb on - strand, within ompC2 at 4027.909 kb on - strand, within ompC2 at 4028.003 kb on - strand, within ompC2 at 4028.096 kb on - strand, within ompC2 at 4028.097 kb on + strand, within ompC2 at 4028.778 kb on + strand, within yddG at 4029.034 kb on - strand, within yddG at 4029.053 kb on + strand, within yddG at 4029.077 kb on - strand, within yddG at 4029.106 kb on + strand, within yddG at 4029.119 kb on - strand, within yddG at 4029.189 kb on - strand, within yddG at 4029.263 kb on + strand, within yddG at 4029.296 kb on + strand, within yddG at 4029.297 kb on - strand, within yddG
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 4,026,380 + HEPCGN_26385 0.45 +1.8 4,026,472 - HEPCGN_26385 0.52 +1.4 4,026,781 - HEPCGN_26385 0.76 -1.6 4,026,949 - HEPCGN_26385 0.90 -0.5 4,027,156 - +0.5 4,027,203 + -1.6 4,027,257 + -1.0 4,027,377 + ompC2 HEPCGN_26390 0.12 +0.3 4,027,399 - ompC2 HEPCGN_26390 0.14 -1.2 4,027,399 - ompC2 HEPCGN_26390 0.14 -0.1 4,027,503 - ompC2 HEPCGN_26390 0.23 +0.5 4,027,545 + ompC2 HEPCGN_26390 0.27 -1.6 4,027,572 + ompC2 HEPCGN_26390 0.30 +1.0 4,027,587 + ompC2 HEPCGN_26390 0.31 -1.9 4,027,618 + ompC2 HEPCGN_26390 0.34 -0.4 4,027,703 - ompC2 HEPCGN_26390 0.41 +3.7 4,027,737 + ompC2 HEPCGN_26390 0.45 +2.1 4,027,738 - ompC2 HEPCGN_26390 0.45 -0.3 4,027,831 - ompC2 HEPCGN_26390 0.53 -0.5 4,027,885 - ompC2 HEPCGN_26390 0.58 +0.1 4,027,909 - ompC2 HEPCGN_26390 0.60 -1.2 4,028,003 - ompC2 HEPCGN_26390 0.69 -0.8 4,028,096 - ompC2 HEPCGN_26390 0.77 -0.4 4,028,097 + ompC2 HEPCGN_26390 0.77 +0.4 4,028,778 + yddG HEPCGN_26395 0.21 -2.3 4,029,034 - yddG HEPCGN_26395 0.52 -0.8 4,029,053 + yddG HEPCGN_26395 0.54 -0.1 4,029,077 - yddG HEPCGN_26395 0.57 -0.9 4,029,106 + yddG HEPCGN_26395 0.61 +1.5 4,029,119 - yddG HEPCGN_26395 0.62 -0.7 4,029,189 - yddG HEPCGN_26395 0.71 -0.2 4,029,263 + yddG HEPCGN_26395 0.80 -1.5 4,029,296 + yddG HEPCGN_26395 0.84 +0.1 4,029,297 - yddG HEPCGN_26395 0.84 +0.7
Or see this region's nucleotide sequence