Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nuoI and nuoJ are separated by 11 nucleotides nuoJ and nuoK overlap by 4 nucleotides nuoK and nuoL overlap by 4 nucleotides
HEPCGN_22080: nuoI - NADH-quinone oxidoreductase subunit NuoI, at 3,174,006 to 3,174,548
nuoI
HEPCGN_22085: nuoJ - NADH-quinone oxidoreductase subunit J, at 3,174,560 to 3,175,114
nuoJ
HEPCGN_22090: nuoK - NADH-quinone oxidoreductase subunit NuoK, at 3,175,111 to 3,175,413
nuoK
HEPCGN_22095: nuoL - NADH-quinone oxidoreductase subunit L, at 3,175,410 to 3,177,251
nuoL
Position (kb)
3175
3176 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3174.146 kb on + strand, within nuoI at 3174.146 kb on + strand, within nuoI at 3174.195 kb on - strand, within nuoI at 3174.378 kb on + strand, within nuoI at 3174.450 kb on - strand, within nuoI at 3174.470 kb on + strand, within nuoI at 3174.471 kb on - strand, within nuoI at 3174.471 kb on - strand, within nuoI at 3174.492 kb on - strand, within nuoI at 3174.575 kb on + strand at 3174.576 kb on - strand at 3174.577 kb on + strand at 3174.597 kb on + strand at 3174.598 kb on - strand at 3174.598 kb on - strand at 3174.705 kb on - strand, within nuoJ at 3174.748 kb on + strand, within nuoJ at 3174.938 kb on - strand, within nuoJ at 3174.952 kb on + strand, within nuoJ at 3174.953 kb on - strand, within nuoJ at 3174.969 kb on - strand, within nuoJ at 3174.973 kb on - strand, within nuoJ at 3174.994 kb on + strand, within nuoJ at 3174.994 kb on + strand, within nuoJ at 3175.151 kb on + strand, within nuoK at 3175.264 kb on + strand, within nuoK at 3175.295 kb on - strand, within nuoK at 3175.394 kb on + strand at 3175.434 kb on - strand at 3175.522 kb on + strand at 3175.540 kb on + strand at 3175.670 kb on + strand, within nuoL at 3175.713 kb on + strand, within nuoL at 3175.713 kb on + strand, within nuoL at 3175.713 kb on + strand, within nuoL at 3175.714 kb on - strand, within nuoL at 3175.714 kb on - strand, within nuoL at 3175.714 kb on - strand, within nuoL at 3175.725 kb on + strand, within nuoL at 3175.860 kb on + strand, within nuoL at 3175.878 kb on + strand, within nuoL at 3176.309 kb on - strand, within nuoL at 3176.309 kb on - strand, within nuoL at 3176.338 kb on - strand, within nuoL at 3176.342 kb on + strand, within nuoL at 3176.342 kb on + strand, within nuoL at 3176.361 kb on + strand, within nuoL
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 3,174,146 + nuoI HEPCGN_22080 0.26 -0.5 3,174,146 + nuoI HEPCGN_22080 0.26 -0.5 3,174,195 - nuoI HEPCGN_22080 0.35 -0.8 3,174,378 + nuoI HEPCGN_22080 0.69 -0.2 3,174,450 - nuoI HEPCGN_22080 0.82 -1.1 3,174,470 + nuoI HEPCGN_22080 0.85 -0.5 3,174,471 - nuoI HEPCGN_22080 0.86 -0.0 3,174,471 - nuoI HEPCGN_22080 0.86 -1.2 3,174,492 - nuoI HEPCGN_22080 0.90 +0.8 3,174,575 + +0.4 3,174,576 - -0.9 3,174,577 + -0.7 3,174,597 + -2.7 3,174,598 - -1.8 3,174,598 - -2.7 3,174,705 - nuoJ HEPCGN_22085 0.26 -1.0 3,174,748 + nuoJ HEPCGN_22085 0.34 -0.3 3,174,938 - nuoJ HEPCGN_22085 0.68 -0.9 3,174,952 + nuoJ HEPCGN_22085 0.71 +1.2 3,174,953 - nuoJ HEPCGN_22085 0.71 -1.8 3,174,969 - nuoJ HEPCGN_22085 0.74 +0.2 3,174,973 - nuoJ HEPCGN_22085 0.74 -1.4 3,174,994 + nuoJ HEPCGN_22085 0.78 -0.2 3,174,994 + nuoJ HEPCGN_22085 0.78 -1.8 3,175,151 + nuoK HEPCGN_22090 0.13 -0.8 3,175,264 + nuoK HEPCGN_22090 0.50 -0.9 3,175,295 - nuoK HEPCGN_22090 0.61 -2.0 3,175,394 + -1.3 3,175,434 - +0.2 3,175,522 + -0.5 3,175,540 + +0.5 3,175,670 + nuoL HEPCGN_22095 0.14 -0.4 3,175,713 + nuoL HEPCGN_22095 0.16 +1.1 3,175,713 + nuoL HEPCGN_22095 0.16 -2.1 3,175,713 + nuoL HEPCGN_22095 0.16 -3.1 3,175,714 - nuoL HEPCGN_22095 0.17 -0.2 3,175,714 - nuoL HEPCGN_22095 0.17 -1.5 3,175,714 - nuoL HEPCGN_22095 0.17 -1.1 3,175,725 + nuoL HEPCGN_22095 0.17 -0.2 3,175,860 + nuoL HEPCGN_22095 0.24 -1.1 3,175,878 + nuoL HEPCGN_22095 0.25 -0.8 3,176,309 - nuoL HEPCGN_22095 0.49 -0.9 3,176,309 - nuoL HEPCGN_22095 0.49 -2.2 3,176,338 - nuoL HEPCGN_22095 0.50 +0.8 3,176,342 + nuoL HEPCGN_22095 0.51 -2.1 3,176,342 + nuoL HEPCGN_22095 0.51 -1.5 3,176,361 + nuoL HEPCGN_22095 0.52 -0.3
Or see this region's nucleotide sequence