Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_18305 and HEPCGN_18310 are separated by 39 nucleotides HEPCGN_18310 and HEPCGN_18315 are separated by 41 nucleotides HEPCGN_18315 and HEPCGN_18320 are separated by 551 nucleotides
HEPCGN_18305: HEPCGN_18305 - DUF417 domain-containing protein, at 2,416,359 to 2,416,787
_18305
HEPCGN_18310: HEPCGN_18310 - TetR/AcrR family transcriptional regulator, at 2,416,827 to 2,417,387
_18310
HEPCGN_18315: HEPCGN_18315 - Outer membrane protein, at 2,417,429 to 2,417,689
_18315
HEPCGN_18320: HEPCGN_18320 - ISL3 family transposase, at 2,418,241 to 2,418,987
_18320
Position (kb)
2417
2418 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2416.479 kb on + strand, within HEPCGN_18305 at 2416.480 kb on - strand, within HEPCGN_18305 at 2416.508 kb on + strand, within HEPCGN_18305 at 2416.512 kb on - strand, within HEPCGN_18305 at 2416.512 kb on - strand, within HEPCGN_18305 at 2416.595 kb on - strand, within HEPCGN_18305 at 2416.620 kb on - strand, within HEPCGN_18305 at 2416.740 kb on - strand, within HEPCGN_18305 at 2417.020 kb on - strand, within HEPCGN_18310 at 2417.146 kb on + strand, within HEPCGN_18310 at 2417.209 kb on - strand, within HEPCGN_18310 at 2417.370 kb on - strand at 2417.420 kb on - strand at 2417.555 kb on + strand, within HEPCGN_18315 at 2417.612 kb on - strand, within HEPCGN_18315 at 2417.634 kb on + strand, within HEPCGN_18315 at 2417.668 kb on + strand at 2417.677 kb on + strand at 2417.677 kb on + strand at 2417.677 kb on + strand at 2417.678 kb on - strand at 2417.682 kb on + strand at 2417.682 kb on + strand at 2417.683 kb on - strand at 2417.715 kb on + strand at 2417.760 kb on + strand at 2417.785 kb on + strand at 2417.835 kb on - strand at 2417.835 kb on - strand at 2417.919 kb on - strand at 2417.922 kb on + strand at 2417.922 kb on + strand at 2417.922 kb on + strand at 2417.922 kb on + strand at 2417.923 kb on - strand at 2417.923 kb on - strand at 2417.923 kb on - strand at 2417.923 kb on - strand at 2417.923 kb on - strand at 2417.975 kb on + strand at 2417.975 kb on + strand at 2417.975 kb on + strand at 2418.021 kb on + strand at 2418.026 kb on - strand at 2418.096 kb on + strand at 2418.097 kb on - strand at 2418.103 kb on + strand at 2418.220 kb on + strand at 2418.220 kb on + strand at 2418.220 kb on + strand at 2418.221 kb on - strand at 2418.223 kb on - strand at 2418.274 kb on + strand at 2418.274 kb on + strand at 2418.275 kb on - strand at 2418.279 kb on - strand at 2418.279 kb on - strand at 2418.421 kb on + strand, within HEPCGN_18320 at 2418.424 kb on - strand, within HEPCGN_18320 at 2418.424 kb on - strand, within HEPCGN_18320 at 2418.425 kb on + strand, within HEPCGN_18320 at 2418.426 kb on - strand, within HEPCGN_18320 at 2418.426 kb on - strand, within HEPCGN_18320 at 2418.426 kb on - strand, within HEPCGN_18320 at 2418.426 kb on - strand, within HEPCGN_18320 at 2418.426 kb on - strand, within HEPCGN_18320 at 2418.446 kb on + strand, within HEPCGN_18320 at 2418.446 kb on + strand, within HEPCGN_18320 at 2418.488 kb on + strand, within HEPCGN_18320 at 2418.488 kb on + strand, within HEPCGN_18320 at 2418.517 kb on - strand, within HEPCGN_18320
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 2,416,479 + HEPCGN_18305 0.28 +0.2 2,416,480 - HEPCGN_18305 0.28 -1.0 2,416,508 + HEPCGN_18305 0.35 -1.1 2,416,512 - HEPCGN_18305 0.36 -0.3 2,416,512 - HEPCGN_18305 0.36 -0.3 2,416,595 - HEPCGN_18305 0.55 -2.0 2,416,620 - HEPCGN_18305 0.61 +0.2 2,416,740 - HEPCGN_18305 0.89 -0.3 2,417,020 - HEPCGN_18310 0.34 +0.5 2,417,146 + HEPCGN_18310 0.57 +1.2 2,417,209 - HEPCGN_18310 0.68 -0.8 2,417,370 - +1.3 2,417,420 - +0.3 2,417,555 + HEPCGN_18315 0.48 -1.7 2,417,612 - HEPCGN_18315 0.70 -1.1 2,417,634 + HEPCGN_18315 0.79 -0.6 2,417,668 + -2.8 2,417,677 + +0.3 2,417,677 + +0.6 2,417,677 + +0.1 2,417,678 - -0.4 2,417,682 + -0.6 2,417,682 + +0.5 2,417,683 - +0.1 2,417,715 + +0.5 2,417,760 + +0.7 2,417,785 + -1.6 2,417,835 - -0.9 2,417,835 - -0.5 2,417,919 - +0.1 2,417,922 + +0.5 2,417,922 + -0.3 2,417,922 + -0.3 2,417,922 + -0.2 2,417,923 - +1.6 2,417,923 - -0.5 2,417,923 - +0.9 2,417,923 - +0.2 2,417,923 - +0.6 2,417,975 + -0.9 2,417,975 + -0.1 2,417,975 + +0.4 2,418,021 + +0.8 2,418,026 - -0.3 2,418,096 + -0.3 2,418,097 - -0.1 2,418,103 + -0.5 2,418,220 + +0.2 2,418,220 + +0.1 2,418,220 + -0.3 2,418,221 - -0.7 2,418,223 - +1.5 2,418,274 + +0.3 2,418,274 + -0.5 2,418,275 - +0.3 2,418,279 - +0.4 2,418,279 - +0.5 2,418,421 + HEPCGN_18320 0.24 +0.0 2,418,424 - HEPCGN_18320 0.24 +0.4 2,418,424 - HEPCGN_18320 0.24 +1.0 2,418,425 + HEPCGN_18320 0.25 +0.5 2,418,426 - HEPCGN_18320 0.25 -0.5 2,418,426 - HEPCGN_18320 0.25 +0.3 2,418,426 - HEPCGN_18320 0.25 -0.1 2,418,426 - HEPCGN_18320 0.25 -0.3 2,418,426 - HEPCGN_18320 0.25 -0.6 2,418,446 + HEPCGN_18320 0.27 -0.7 2,418,446 + HEPCGN_18320 0.27 -0.8 2,418,488 + HEPCGN_18320 0.33 -0.5 2,418,488 + HEPCGN_18320 0.33 -0.5 2,418,517 - HEPCGN_18320 0.37 -0.4
Or see this region's nucleotide sequence