Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt argG and fMet_trna are separated by 347 nucleotides fMet_trna and rimP are separated by 206 nucleotides rimP and nusA are separated by 27 nucleotides
HEPCGN_16965: argG - argininosuccinate synthase, at 2,141,863 to 2,143,206
argG
HEPCGN_16970: fMet_trna - tRNA-fMet(cat), at 2,143,554 to 2,143,630
_trna
HEPCGN_16975: rimP - ribosome maturation factor RimP, at 2,143,837 to 2,144,289
rimP
HEPCGN_16980: nusA - Transcription termination/antitermination protein NusA, at 2,144,317 to 2,145,804
nusA
Position (kb)
2143
2144 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2142.581 kb on + strand, within argG at 2142.581 kb on + strand, within argG at 2142.720 kb on + strand, within argG at 2142.721 kb on - strand, within argG at 2142.721 kb on - strand, within argG at 2142.721 kb on - strand, within argG at 2142.812 kb on + strand, within argG at 2142.812 kb on + strand, within argG at 2142.813 kb on - strand, within argG at 2142.813 kb on - strand, within argG at 2142.912 kb on - strand, within argG at 2142.912 kb on - strand, within argG at 2142.964 kb on - strand, within argG at 2143.084 kb on - strand at 2143.085 kb on + strand at 2143.085 kb on + strand at 2143.085 kb on + strand at 2143.086 kb on - strand at 2143.086 kb on - strand at 2143.086 kb on - strand at 2143.206 kb on + strand at 2143.211 kb on + strand at 2143.211 kb on + strand at 2143.212 kb on - strand at 2143.224 kb on - strand at 2143.378 kb on + strand at 2143.379 kb on - strand at 2143.406 kb on + strand at 2143.406 kb on + strand at 2143.407 kb on - strand at 2143.407 kb on - strand at 2143.575 kb on - strand, within fMet_trna at 2143.736 kb on + strand at 2143.749 kb on + strand at 2143.751 kb on + strand at 2144.287 kb on + strand at 2144.287 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 2,142,581 + argG HEPCGN_16965 0.53 -0.4 2,142,581 + argG HEPCGN_16965 0.53 -1.1 2,142,720 + argG HEPCGN_16965 0.64 -0.9 2,142,721 - argG HEPCGN_16965 0.64 +0.4 2,142,721 - argG HEPCGN_16965 0.64 +0.5 2,142,721 - argG HEPCGN_16965 0.64 +0.3 2,142,812 + argG HEPCGN_16965 0.71 -0.6 2,142,812 + argG HEPCGN_16965 0.71 +0.3 2,142,813 - argG HEPCGN_16965 0.71 +1.0 2,142,813 - argG HEPCGN_16965 0.71 -0.5 2,142,912 - argG HEPCGN_16965 0.78 +0.4 2,142,912 - argG HEPCGN_16965 0.78 +0.1 2,142,964 - argG HEPCGN_16965 0.82 -0.3 2,143,084 - +0.5 2,143,085 + +1.4 2,143,085 + +0.9 2,143,085 + +2.1 2,143,086 - -0.3 2,143,086 - +0.1 2,143,086 - +0.5 2,143,206 + +0.1 2,143,211 + -0.3 2,143,211 + -0.0 2,143,212 - +0.2 2,143,224 - -0.3 2,143,378 + -0.0 2,143,379 - +2.3 2,143,406 + -1.0 2,143,406 + +0.6 2,143,407 - -0.3 2,143,407 - -0.9 2,143,575 - fMet_trna HEPCGN_16970 0.27 +0.2 2,143,736 + +2.0 2,143,749 + +0.2 2,143,751 + +1.0 2,144,287 + -1.8 2,144,287 + -2.7
Or see this region's nucleotide sequence