Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gatY and HEPCGN_16540 are separated by 35 nucleotides HEPCGN_16540 and xylG are separated by 60 nucleotides xylG and HEPCGN_16550 are separated by 0 nucleotides
HEPCGN_16535: gatY - tagatose bisphosphate family class II aldolase, at 2,053,333 to 2,054,187
gatY
HEPCGN_16540: HEPCGN_16540 - sugar ABC transporter, at 2,054,223 to 2,055,113
_16540
HEPCGN_16545: xylG - D-xylose ABC transporter ATP-binding protein, at 2,055,174 to 2,056,673
xylG
HEPCGN_16550: HEPCGN_16550 - ABC transporter permease, at 2,056,674 to 2,057,663
_16550
Position (kb)
2055
2056
2057 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2054.398 kb on + strand, within HEPCGN_16540 at 2054.675 kb on - strand, within HEPCGN_16540 at 2054.682 kb on - strand, within HEPCGN_16540 at 2055.023 kb on + strand, within HEPCGN_16540 at 2055.024 kb on - strand, within HEPCGN_16540 at 2055.099 kb on + strand at 2055.275 kb on + strand at 2055.280 kb on + strand at 2055.596 kb on + strand, within xylG at 2055.612 kb on - strand, within xylG at 2055.646 kb on - strand, within xylG at 2055.831 kb on - strand, within xylG at 2056.157 kb on + strand, within xylG at 2056.208 kb on - strand, within xylG at 2056.257 kb on + strand, within xylG at 2056.259 kb on + strand, within xylG at 2056.259 kb on + strand, within xylG at 2056.259 kb on + strand, within xylG at 2056.337 kb on + strand, within xylG at 2056.338 kb on - strand, within xylG at 2056.351 kb on + strand, within xylG at 2056.351 kb on + strand, within xylG at 2056.352 kb on - strand, within xylG at 2056.430 kb on + strand, within xylG at 2056.499 kb on - strand, within xylG at 2056.667 kb on - strand at 2056.890 kb on + strand, within HEPCGN_16550 at 2056.891 kb on - strand, within HEPCGN_16550 at 2057.093 kb on + strand, within HEPCGN_16550 at 2057.094 kb on - strand, within HEPCGN_16550 at 2057.300 kb on + strand, within HEPCGN_16550 at 2057.381 kb on + strand, within HEPCGN_16550 at 2057.442 kb on + strand, within HEPCGN_16550 at 2057.457 kb on - strand, within HEPCGN_16550
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 2,054,398 + HEPCGN_16540 0.20 +0.0 2,054,675 - HEPCGN_16540 0.51 +0.2 2,054,682 - HEPCGN_16540 0.52 +0.1 2,055,023 + HEPCGN_16540 0.90 -0.1 2,055,024 - HEPCGN_16540 0.90 -2.4 2,055,099 + +0.9 2,055,275 + +0.6 2,055,280 + -0.1 2,055,596 + xylG HEPCGN_16545 0.28 +0.4 2,055,612 - xylG HEPCGN_16545 0.29 +2.1 2,055,646 - xylG HEPCGN_16545 0.31 -0.0 2,055,831 - xylG HEPCGN_16545 0.44 +0.4 2,056,157 + xylG HEPCGN_16545 0.66 -0.2 2,056,208 - xylG HEPCGN_16545 0.69 +0.5 2,056,257 + xylG HEPCGN_16545 0.72 -0.6 2,056,259 + xylG HEPCGN_16545 0.72 +0.5 2,056,259 + xylG HEPCGN_16545 0.72 -0.3 2,056,259 + xylG HEPCGN_16545 0.72 +0.7 2,056,337 + xylG HEPCGN_16545 0.78 -1.0 2,056,338 - xylG HEPCGN_16545 0.78 -0.3 2,056,351 + xylG HEPCGN_16545 0.78 -0.6 2,056,351 + xylG HEPCGN_16545 0.78 +2.3 2,056,352 - xylG HEPCGN_16545 0.79 -1.3 2,056,430 + xylG HEPCGN_16545 0.84 -0.7 2,056,499 - xylG HEPCGN_16545 0.88 +0.1 2,056,667 - -0.5 2,056,890 + HEPCGN_16550 0.22 +0.3 2,056,891 - HEPCGN_16550 0.22 -1.3 2,057,093 + HEPCGN_16550 0.42 -0.6 2,057,094 - HEPCGN_16550 0.42 +0.4 2,057,300 + HEPCGN_16550 0.63 +0.6 2,057,381 + HEPCGN_16550 0.71 +0.4 2,057,442 + HEPCGN_16550 0.78 +0.6 2,057,457 - HEPCGN_16550 0.79 +0.0
Or see this region's nucleotide sequence