Strain Fitness in Escherichia coli ECOR38 around HEPCGN_15345

Experiment: K5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	K5
1,829,435	+	dtpB	HEPCGN_15335	0.56	+0.3
1,829,436	-	dtpB	HEPCGN_15335	0.56	-0.3
1,829,514	-	dtpB	HEPCGN_15335	0.61	-0.2
1,829,556	-	dtpB	HEPCGN_15335	0.64	-0.1
1,829,556	-	dtpB	HEPCGN_15335	0.64	-0.5
1,829,556	-	dtpB	HEPCGN_15335	0.64	-1.2
1,829,567	+	dtpB	HEPCGN_15335	0.65	-0.7
1,829,567	+	dtpB	HEPCGN_15335	0.65	-0.7
1,829,577	+	dtpB	HEPCGN_15335	0.66	+0.3
1,829,634	+	dtpB	HEPCGN_15335	0.70	-0.6
1,829,635	-	dtpB	HEPCGN_15335	0.70	+0.2
1,829,636	+	dtpB	HEPCGN_15335	0.70	-1.0
1,829,636	+	dtpB	HEPCGN_15335	0.70	-0.6
1,829,636	+	dtpB	HEPCGN_15335	0.70	-0.6
1,829,637	-	dtpB	HEPCGN_15335	0.70	-0.5
1,829,637	-	dtpB	HEPCGN_15335	0.70	-0.3
1,829,637	-	dtpB	HEPCGN_15335	0.70	-1.4
1,829,637	-	dtpB	HEPCGN_15335	0.70	+0.1
1,829,646	+	dtpB	HEPCGN_15335	0.70	+0.8
1,829,647	-	dtpB	HEPCGN_15335	0.70	+0.4
1,829,710	-	dtpB	HEPCGN_15335	0.75	+1.9
1,829,740	-	dtpB	HEPCGN_15335	0.77	+1.2
1,829,772	+	dtpB	HEPCGN_15335	0.79	-0.2
1,829,772	+	dtpB	HEPCGN_15335	0.79	+1.0
1,829,773	-	dtpB	HEPCGN_15335	0.79	-0.8
1,829,773	-	dtpB	HEPCGN_15335	0.79	-0.2
1,829,773	-	dtpB	HEPCGN_15335	0.79	-0.5
1,829,773	-	dtpB	HEPCGN_15335	0.79	+1.1
1,829,891	+	dtpB	HEPCGN_15335	0.87	+1.5
1,829,991	-				-0.9
1,830,011	-				+0.2
1,830,075	+				-0.5
1,830,075	+				-0.4
1,830,075	+				-1.5
1,830,075	+				-0.4
1,830,076	-				+0.4
1,830,076	-				+0.7
1,830,081	+				-0.8
1,830,082	-				+0.1
1,830,082	-				+0.3
1,830,086	-				-0.8
1,830,099	+				+0.1
1,830,099	+				-0.1
1,830,114	+				+0.4
1,830,149	-				+1.4
1,830,168	-				+0.1
1,830,168	-				+0.3
1,830,171	-				+0.2
1,830,191	-				+0.2
1,830,198	+				+1.5
1,830,198	+				-1.2
1,830,199	-				-1.2
1,830,231	-				-0.3
1,830,231	-				+1.3
1,830,244	-				+1.1
1,830,264	-		HEPCGN_15340	0.31	-0.6
1,830,308	-				+0.4
1,830,316	+				-0.6
1,830,361	+				+0.8
1,830,432	+				-0.4
1,830,432	+				-0.4
1,830,527	+	uspA	HEPCGN_15345	0.30	-0.7
1,830,527	+	uspA	HEPCGN_15345	0.30	-0.0
1,830,606	+	uspA	HEPCGN_15345	0.48	+1.1
1,830,607	-	uspA	HEPCGN_15345	0.48	-1.3
1,830,660	+	uspA	HEPCGN_15345	0.60	-0.2
1,830,692	+	uspA	HEPCGN_15345	0.68	+0.1
1,830,693	-	uspA	HEPCGN_15345	0.68	+0.1
1,830,694	+	uspA	HEPCGN_15345	0.68	-0.6
1,830,695	-	uspA	HEPCGN_15345	0.69	-0.4
1,830,704	+	uspA	HEPCGN_15345	0.71	-1.5
1,830,709	+	uspA	HEPCGN_15345	0.72	+1.0
1,830,709	+	uspA	HEPCGN_15345	0.72	-0.0
1,830,709	+	uspA	HEPCGN_15345	0.72	-0.2
1,830,709	+	uspA	HEPCGN_15345	0.72	+0.3
1,830,709	+	uspA	HEPCGN_15345	0.72	-0.0
1,830,710	-	uspA	HEPCGN_15345	0.72	-0.2
1,830,715	+	uspA	HEPCGN_15345	0.73	-0.1
1,830,716	-	uspA	HEPCGN_15345	0.73	-0.5
1,830,716	-	uspA	HEPCGN_15345	0.73	+1.3
1,830,716	-	uspA	HEPCGN_15345	0.73	-2.5
1,830,716	-	uspA	HEPCGN_15345	0.73	-1.0
1,830,756	+	uspA	HEPCGN_15345	0.83	-0.9
1,830,757	-	uspA	HEPCGN_15345	0.83	-0.4
1,830,823	-				-0.6
1,830,824	+				-0.2
1,830,824	+				+0.4
1,830,825	-				+0.8
1,830,831	+				-0.1
1,830,832	-				-0.3
1,830,837	+				+0.9
1,830,848	+				-0.9
1,830,873	-				+0.3
1,830,913	+				-0.8
1,830,914	-				+0.4
1,830,953	-				+0.8
1,830,964	+				+1.3
1,830,964	+				+0.4
1,830,965	-				+1.5
1,830,969	+				-0.2
1,830,972	-				-0.7
1,831,037	+				+0.4
1,831,039	+				-2.3
1,831,040	-				-0.3
1,831,040	-				-0.6
1,831,045	+				-0.5
1,831,084	+				+1.0
1,831,085	-				-0.2
1,831,089	+				-0.3
1,831,089	+				+0.2
1,831,089	+				-0.8
1,831,089	+				-1.2
1,831,089	+				+0.7
1,831,089	+				+0.5
1,831,090	-				+0.9
1,831,090	-				+0.0
1,831,090	-				+0.2
1,831,090	-				+0.1
1,831,090	-				+0.4
1,831,093	+				-0.2
1,831,093	+				+0.7
1,831,094	-				-1.0
1,831,222	-				-0.7
1,831,222	-				+0.4
1,831,222	-				-0.0
1,831,227	-				+0.6
1,831,253	+				+0.4
1,831,272	+	uspB	HEPCGN_15350	0.15	+0.2
1,831,310	+	uspB	HEPCGN_15350	0.26	+0.2
1,831,342	+	uspB	HEPCGN_15350	0.36	-0.3
1,831,342	+	uspB	HEPCGN_15350	0.36	-1.3
1,831,348	+	uspB	HEPCGN_15350	0.38	+0.7
1,831,348	+	uspB	HEPCGN_15350	0.38	+0.3
1,831,348	+	uspB	HEPCGN_15350	0.38	+0.1
1,831,348	+	uspB	HEPCGN_15350	0.38	+0.4
1,831,348	+	uspB	HEPCGN_15350	0.38	+1.2
1,831,348	+	uspB	HEPCGN_15350	0.38	-2.0
1,831,349	-	uspB	HEPCGN_15350	0.38	+0.8
1,831,349	-	uspB	HEPCGN_15350	0.38	-0.4
1,831,371	+	uspB	HEPCGN_15350	0.44	+0.8
1,831,372	-	uspB	HEPCGN_15350	0.45	+0.2
1,831,414	+	uspB	HEPCGN_15350	0.57	+0.1
1,831,415	-	uspB	HEPCGN_15350	0.57	+0.1
1,831,415	-	uspB	HEPCGN_15350	0.57	-0.5
1,831,416	+	uspB	HEPCGN_15350	0.58	+0.4
1,831,417	-	uspB	HEPCGN_15350	0.58	-0.1
1,831,417	-	uspB	HEPCGN_15350	0.58	-1.1
1,831,421	-	uspB	HEPCGN_15350	0.59	+0.7
1,831,421	-	uspB	HEPCGN_15350	0.59	+0.4
1,831,459	-	uspB	HEPCGN_15350	0.71	+0.9
1,831,492	-	uspB	HEPCGN_15350	0.80	-1.1
1,831,624	-				-0.4
1,831,653	+				-0.8
1,831,690	+				+0.1
1,831,691	-				+0.0
1,831,694	+				+0.1
1,831,748	+				-1.4
1,831,748	+				-1.8
1,831,749	-				+1.3
1,831,790	-	pitA	HEPCGN_15355	0.11	-0.6