Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt epmA and frdA are separated by 324 nucleotides frdA and frdB overlap by 8 nucleotides frdB and HEPCGN_10580 are separated by 10 nucleotides
HEPCGN_10565: epmA - elongation factor P--(R)-beta-lysine ligase, at 855,886 to 856,863
epmA
HEPCGN_10570: frdA - fumarate reductase (quinol) flavoprotein subunit, at 857,188 to 858,996
frdA
HEPCGN_10575: frdB - fumarate reductase iron-sulfur protein, at 858,989 to 859,723
frdB
HEPCGN_10580: HEPCGN_10580 - Fumarate reductase subunit C, at 859,734 to 860,129
_10580
Position (kb) 857
858
859 Strain fitness (log2 ratio) -2
-1
0
1
2 at 856.255 kb on - strand, within epmA at 856.289 kb on - strand, within epmA at 856.419 kb on - strand, within epmA at 856.491 kb on - strand, within epmA at 856.524 kb on + strand, within epmA at 856.525 kb on - strand, within epmA at 856.737 kb on + strand, within epmA at 856.813 kb on + strand at 856.814 kb on - strand at 856.817 kb on - strand at 856.817 kb on - strand at 856.821 kb on + strand at 856.822 kb on - strand at 856.863 kb on + strand at 856.863 kb on + strand at 856.864 kb on - strand at 856.961 kb on + strand at 857.019 kb on - strand at 857.077 kb on + strand at 857.078 kb on - strand at 857.078 kb on - strand at 857.078 kb on - strand at 857.079 kb on + strand at 857.087 kb on + strand at 857.088 kb on - strand at 857.088 kb on - strand at 857.091 kb on + strand at 857.091 kb on + strand at 857.092 kb on - strand at 857.092 kb on - strand at 857.092 kb on - strand at 857.094 kb on - strand at 857.094 kb on - strand at 857.109 kb on + strand at 857.140 kb on + strand at 857.141 kb on - strand at 857.151 kb on - strand at 857.219 kb on + strand at 857.219 kb on + strand at 857.241 kb on - strand at 857.304 kb on - strand at 857.304 kb on - strand at 857.381 kb on - strand, within frdA at 857.528 kb on + strand, within frdA at 857.529 kb on - strand, within frdA at 857.529 kb on - strand, within frdA at 857.592 kb on + strand, within frdA at 857.791 kb on + strand, within frdA at 857.791 kb on + strand, within frdA at 857.791 kb on + strand, within frdA at 857.792 kb on - strand, within frdA at 858.033 kb on + strand, within frdA at 858.127 kb on + strand, within frdA at 858.202 kb on + strand, within frdA at 858.202 kb on + strand, within frdA at 858.202 kb on + strand, within frdA at 858.203 kb on - strand, within frdA at 858.203 kb on - strand, within frdA at 858.256 kb on + strand, within frdA at 858.256 kb on + strand, within frdA at 858.256 kb on + strand, within frdA at 858.256 kb on + strand, within frdA at 858.257 kb on - strand, within frdA at 858.257 kb on - strand, within frdA at 858.257 kb on - strand, within frdA at 858.420 kb on + strand, within frdA at 858.586 kb on + strand, within frdA at 858.591 kb on + strand, within frdA at 858.741 kb on + strand, within frdA at 858.742 kb on - strand, within frdA at 858.765 kb on + strand, within frdA at 858.765 kb on + strand, within frdA at 858.900 kb on + strand at 858.900 kb on + strand at 858.903 kb on + strand at 858.918 kb on + strand at 858.954 kb on + strand at 858.973 kb on - strand at 859.058 kb on - strand at 859.067 kb on + strand, within frdB at 859.068 kb on - strand, within frdB at 859.068 kb on - strand, within frdB at 859.098 kb on + strand, within frdB at 859.116 kb on - strand, within frdB at 859.222 kb on + strand, within frdB at 859.242 kb on - strand, within frdB at 859.269 kb on + strand, within frdB at 859.269 kb on + strand, within frdB at 859.273 kb on + strand, within frdB at 859.384 kb on + strand, within frdB at 859.384 kb on + strand, within frdB at 859.385 kb on - strand, within frdB at 859.416 kb on - strand, within frdB at 859.454 kb on + strand, within frdB at 859.510 kb on + strand, within frdB at 859.527 kb on - strand, within frdB at 859.603 kb on + strand, within frdB at 859.603 kb on + strand, within frdB at 859.677 kb on + strand at 859.748 kb on + strand at 859.755 kb on + strand at 859.755 kb on + strand at 859.755 kb on + strand at 859.755 kb on + strand at 859.756 kb on - strand at 859.756 kb on - strand at 859.759 kb on + strand at 859.759 kb on + strand at 859.759 kb on + strand at 859.759 kb on + strand at 859.759 kb on + strand at 859.809 kb on + strand, within HEPCGN_10580
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 856,255 - epmA HEPCGN_10565 0.38 +0.2 856,289 - epmA HEPCGN_10565 0.41 +2.3 856,419 - epmA HEPCGN_10565 0.54 -0.7 856,491 - epmA HEPCGN_10565 0.62 -0.2 856,524 + epmA HEPCGN_10565 0.65 +1.7 856,525 - epmA HEPCGN_10565 0.65 -1.0 856,737 + epmA HEPCGN_10565 0.87 +0.2 856,813 + +1.3 856,814 - +0.1 856,817 - -0.2 856,817 - -0.4 856,821 + -0.4 856,822 - -0.1 856,863 + -1.2 856,863 + +0.6 856,864 - +0.8 856,961 + -0.4 857,019 - +0.3 857,077 + +0.1 857,078 - -0.3 857,078 - +0.1 857,078 - -0.4 857,079 + +0.0 857,087 + -0.7 857,088 - -1.1 857,088 - -1.7 857,091 + +0.6 857,091 + +1.7 857,092 - +0.0 857,092 - -0.6 857,092 - -0.1 857,094 - +0.3 857,094 - -1.2 857,109 + +0.2 857,140 + -0.8 857,141 - -0.1 857,151 - +0.5 857,219 + +1.3 857,219 + -1.3 857,241 - -1.8 857,304 - -0.9 857,304 - -0.4 857,381 - frdA HEPCGN_10570 0.11 -0.1 857,528 + frdA HEPCGN_10570 0.19 -0.3 857,529 - frdA HEPCGN_10570 0.19 -0.8 857,529 - frdA HEPCGN_10570 0.19 -0.3 857,592 + frdA HEPCGN_10570 0.22 -0.5 857,791 + frdA HEPCGN_10570 0.33 -0.4 857,791 + frdA HEPCGN_10570 0.33 +1.7 857,791 + frdA HEPCGN_10570 0.33 +0.6 857,792 - frdA HEPCGN_10570 0.33 -0.5 858,033 + frdA HEPCGN_10570 0.47 +0.5 858,127 + frdA HEPCGN_10570 0.52 +0.0 858,202 + frdA HEPCGN_10570 0.56 -1.4 858,202 + frdA HEPCGN_10570 0.56 -1.3 858,202 + frdA HEPCGN_10570 0.56 +0.2 858,203 - frdA HEPCGN_10570 0.56 -0.9 858,203 - frdA HEPCGN_10570 0.56 -0.5 858,256 + frdA HEPCGN_10570 0.59 -0.7 858,256 + frdA HEPCGN_10570 0.59 -0.3 858,256 + frdA HEPCGN_10570 0.59 -0.1 858,256 + frdA HEPCGN_10570 0.59 +0.2 858,257 - frdA HEPCGN_10570 0.59 +1.0 858,257 - frdA HEPCGN_10570 0.59 -0.1 858,257 - frdA HEPCGN_10570 0.59 -0.2 858,420 + frdA HEPCGN_10570 0.68 +0.6 858,586 + frdA HEPCGN_10570 0.77 +0.2 858,591 + frdA HEPCGN_10570 0.78 +0.9 858,741 + frdA HEPCGN_10570 0.86 +0.9 858,742 - frdA HEPCGN_10570 0.86 +0.4 858,765 + frdA HEPCGN_10570 0.87 -0.4 858,765 + frdA HEPCGN_10570 0.87 -1.2 858,900 + -0.9 858,900 + -0.5 858,903 + +0.2 858,918 + -0.5 858,954 + +0.2 858,973 - -0.1 859,058 - -0.2 859,067 + frdB HEPCGN_10575 0.11 +0.5 859,068 - frdB HEPCGN_10575 0.11 -1.3 859,068 - frdB HEPCGN_10575 0.11 -1.4 859,098 + frdB HEPCGN_10575 0.15 -0.8 859,116 - frdB HEPCGN_10575 0.17 +0.4 859,222 + frdB HEPCGN_10575 0.32 +0.9 859,242 - frdB HEPCGN_10575 0.34 -1.7 859,269 + frdB HEPCGN_10575 0.38 +0.1 859,269 + frdB HEPCGN_10575 0.38 -1.3 859,273 + frdB HEPCGN_10575 0.39 +0.3 859,384 + frdB HEPCGN_10575 0.54 +0.1 859,384 + frdB HEPCGN_10575 0.54 -0.7 859,385 - frdB HEPCGN_10575 0.54 +1.3 859,416 - frdB HEPCGN_10575 0.58 +0.7 859,454 + frdB HEPCGN_10575 0.63 +1.1 859,510 + frdB HEPCGN_10575 0.71 -0.1 859,527 - frdB HEPCGN_10575 0.73 -1.7 859,603 + frdB HEPCGN_10575 0.84 +0.2 859,603 + frdB HEPCGN_10575 0.84 -0.8 859,677 + -0.0 859,748 + -0.6 859,755 + -0.3 859,755 + +0.7 859,755 + -0.7 859,755 + +0.1 859,756 - -0.2 859,756 - +0.7 859,759 + -0.7 859,759 + -0.6 859,759 + +0.2 859,759 + -1.4 859,759 + -0.7 859,809 + HEPCGN_10580 0.19 -0.3
Or see this region's nucleotide sequence