Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_09920 and intB are separated by 525 nucleotides intB and Leu_trna are separated by 186 nucleotides Leu_trna and ahr are separated by 195 nucleotides
HEPCGN_09920: HEPCGN_09920 - Putative sulfatase, at 729,458 to 729,790
_09920
HEPCGN_09925: intB - Putative protein IntB, at 730,316 to 731,581
intB
HEPCGN_09930: Leu_trna - tRNA-Leu(caa), at 731,768 to 731,852
_trna
HEPCGN_09935: ahr - NADPH-dependent aldehyde reductase Ahr, at 732,048 to 733,067
ahr
Position (kb) 730
731
732 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 729.316 kb on + strand at 729.317 kb on - strand at 729.323 kb on + strand at 729.324 kb on - strand at 729.324 kb on - strand at 729.364 kb on + strand at 729.364 kb on + strand at 729.365 kb on - strand at 729.430 kb on + strand at 729.594 kb on + strand, within HEPCGN_09920 at 729.595 kb on - strand, within HEPCGN_09920 at 729.595 kb on - strand, within HEPCGN_09920 at 729.651 kb on + strand, within HEPCGN_09920 at 729.651 kb on + strand, within HEPCGN_09920 at 729.726 kb on + strand, within HEPCGN_09920 at 729.727 kb on - strand, within HEPCGN_09920 at 729.728 kb on + strand, within HEPCGN_09920 at 729.728 kb on + strand, within HEPCGN_09920 at 729.728 kb on + strand, within HEPCGN_09920 at 729.728 kb on + strand, within HEPCGN_09920 at 729.734 kb on - strand, within HEPCGN_09920 at 729.775 kb on + strand at 729.775 kb on + strand at 729.776 kb on - strand at 729.788 kb on + strand at 729.788 kb on + strand at 729.789 kb on - strand at 729.789 kb on - strand at 730.347 kb on + strand at 730.348 kb on - strand at 730.406 kb on + strand at 730.449 kb on + strand, within intB at 730.449 kb on + strand, within intB at 730.449 kb on + strand, within intB at 730.538 kb on - strand, within intB at 730.588 kb on - strand, within intB at 730.614 kb on - strand, within intB at 730.614 kb on - strand, within intB at 730.614 kb on - strand, within intB at 730.661 kb on + strand, within intB at 730.662 kb on - strand, within intB at 730.733 kb on + strand, within intB at 730.733 kb on + strand, within intB at 730.734 kb on - strand, within intB at 730.787 kb on - strand, within intB at 730.807 kb on + strand, within intB at 730.873 kb on + strand, within intB at 730.926 kb on + strand, within intB at 730.926 kb on + strand, within intB at 730.926 kb on + strand, within intB at 730.927 kb on - strand, within intB at 730.927 kb on - strand, within intB at 730.927 kb on - strand, within intB at 730.927 kb on - strand, within intB at 730.927 kb on - strand, within intB at 730.927 kb on - strand, within intB at 730.930 kb on + strand, within intB at 730.930 kb on + strand, within intB at 730.930 kb on + strand, within intB at 730.931 kb on - strand, within intB at 730.935 kb on - strand, within intB at 730.943 kb on - strand, within intB at 731.035 kb on - strand, within intB at 731.077 kb on + strand, within intB at 731.126 kb on + strand, within intB at 731.137 kb on + strand, within intB at 731.144 kb on + strand, within intB at 731.148 kb on - strand, within intB at 731.174 kb on - strand, within intB at 731.176 kb on + strand, within intB at 731.176 kb on + strand, within intB at 731.176 kb on + strand, within intB at 731.220 kb on - strand, within intB at 731.288 kb on - strand, within intB at 731.399 kb on + strand, within intB at 731.473 kb on - strand at 731.476 kb on + strand at 731.476 kb on + strand at 731.476 kb on + strand at 731.477 kb on - strand at 731.527 kb on + strand at 731.529 kb on + strand at 731.530 kb on - strand at 731.566 kb on + strand at 731.625 kb on + strand at 731.645 kb on + strand at 731.645 kb on + strand at 731.646 kb on - strand at 731.646 kb on - strand at 731.659 kb on + strand at 731.659 kb on + strand at 731.660 kb on - strand at 731.689 kb on + strand at 731.690 kb on - strand at 731.710 kb on + strand at 731.710 kb on + strand at 731.758 kb on + strand at 731.886 kb on + strand at 731.886 kb on + strand at 731.887 kb on - strand at 731.959 kb on + strand at 731.959 kb on + strand at 732.012 kb on + strand at 732.012 kb on + strand at 732.013 kb on - strand at 732.066 kb on + strand at 732.102 kb on + strand at 732.329 kb on + strand, within ahr at 732.353 kb on + strand, within ahr at 732.401 kb on + strand, within ahr at 732.470 kb on + strand, within ahr at 732.542 kb on + strand, within ahr at 732.568 kb on + strand, within ahr at 732.569 kb on - strand, within ahr
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 729,316 + -0.7 729,317 - +1.4 729,323 + -0.9 729,324 - +0.4 729,324 - -0.0 729,364 + -0.3 729,364 + +0.2 729,365 - +0.1 729,430 + -0.8 729,594 + HEPCGN_09920 0.41 +0.3 729,595 - HEPCGN_09920 0.41 -1.1 729,595 - HEPCGN_09920 0.41 -0.6 729,651 + HEPCGN_09920 0.58 +0.4 729,651 + HEPCGN_09920 0.58 -0.1 729,726 + HEPCGN_09920 0.80 -0.6 729,727 - HEPCGN_09920 0.81 -0.2 729,728 + HEPCGN_09920 0.81 +0.5 729,728 + HEPCGN_09920 0.81 -0.2 729,728 + HEPCGN_09920 0.81 -0.8 729,728 + HEPCGN_09920 0.81 +0.0 729,734 - HEPCGN_09920 0.83 +1.0 729,775 + +0.2 729,775 + +1.1 729,776 - -1.5 729,788 + -0.9 729,788 + -1.6 729,789 - +0.0 729,789 - -0.2 730,347 + +0.3 730,348 - -0.0 730,406 + +0.4 730,449 + intB HEPCGN_09925 0.11 -0.3 730,449 + intB HEPCGN_09925 0.11 -0.8 730,449 + intB HEPCGN_09925 0.11 -0.2 730,538 - intB HEPCGN_09925 0.18 +0.9 730,588 - intB HEPCGN_09925 0.21 -0.2 730,614 - intB HEPCGN_09925 0.24 +0.8 730,614 - intB HEPCGN_09925 0.24 -0.4 730,614 - intB HEPCGN_09925 0.24 +0.3 730,661 + intB HEPCGN_09925 0.27 +0.0 730,662 - intB HEPCGN_09925 0.27 +0.1 730,733 + intB HEPCGN_09925 0.33 -1.0 730,733 + intB HEPCGN_09925 0.33 +0.9 730,734 - intB HEPCGN_09925 0.33 -1.1 730,787 - intB HEPCGN_09925 0.37 +1.4 730,807 + intB HEPCGN_09925 0.39 -0.4 730,873 + intB HEPCGN_09925 0.44 -2.8 730,926 + intB HEPCGN_09925 0.48 -0.4 730,926 + intB HEPCGN_09925 0.48 +0.5 730,926 + intB HEPCGN_09925 0.48 -0.2 730,927 - intB HEPCGN_09925 0.48 -0.1 730,927 - intB HEPCGN_09925 0.48 +1.3 730,927 - intB HEPCGN_09925 0.48 -0.7 730,927 - intB HEPCGN_09925 0.48 +0.4 730,927 - intB HEPCGN_09925 0.48 +0.0 730,927 - intB HEPCGN_09925 0.48 -0.4 730,930 + intB HEPCGN_09925 0.48 +0.3 730,930 + intB HEPCGN_09925 0.48 +2.1 730,930 + intB HEPCGN_09925 0.48 +3.0 730,931 - intB HEPCGN_09925 0.49 +0.2 730,935 - intB HEPCGN_09925 0.49 -1.0 730,943 - intB HEPCGN_09925 0.50 -1.2 731,035 - intB HEPCGN_09925 0.57 -0.6 731,077 + intB HEPCGN_09925 0.60 -0.4 731,126 + intB HEPCGN_09925 0.64 -0.2 731,137 + intB HEPCGN_09925 0.65 -0.9 731,144 + intB HEPCGN_09925 0.65 +1.3 731,148 - intB HEPCGN_09925 0.66 -0.9 731,174 - intB HEPCGN_09925 0.68 +3.2 731,176 + intB HEPCGN_09925 0.68 +0.0 731,176 + intB HEPCGN_09925 0.68 -0.0 731,176 + intB HEPCGN_09925 0.68 +0.2 731,220 - intB HEPCGN_09925 0.71 -1.1 731,288 - intB HEPCGN_09925 0.77 +0.6 731,399 + intB HEPCGN_09925 0.86 +0.3 731,473 - -0.2 731,476 + +0.2 731,476 + -1.2 731,476 + +0.9 731,477 - +0.5 731,527 + +0.9 731,529 + -0.4 731,530 - -0.7 731,566 + -0.8 731,625 + -0.2 731,645 + -0.0 731,645 + -0.6 731,646 - -0.3 731,646 - +0.1 731,659 + +0.6 731,659 + +1.4 731,660 - -0.4 731,689 + +0.7 731,690 - -0.2 731,710 + -3.0 731,710 + +0.0 731,758 + +0.0 731,886 + +0.6 731,886 + +0.4 731,887 - -0.5 731,959 + +0.5 731,959 + +0.4 732,012 + -1.5 732,012 + -0.2 732,013 - +0.7 732,066 + +0.5 732,102 + -0.0 732,329 + ahr HEPCGN_09935 0.28 -1.4 732,353 + ahr HEPCGN_09935 0.30 -0.3 732,401 + ahr HEPCGN_09935 0.35 -3.0 732,470 + ahr HEPCGN_09935 0.41 +0.6 732,542 + ahr HEPCGN_09935 0.48 -0.1 732,568 + ahr HEPCGN_09935 0.51 +0.5 732,569 - ahr HEPCGN_09935 0.51 +0.1
Or see this region's nucleotide sequence