Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_09920 and intB are separated by 525 nucleotides
HEPCGN_09920: HEPCGN_09920 - Putative sulfatase, at 729,458 to 729,790
_09920
HEPCGN_09925: intB - Putative protein IntB, at 730,316 to 731,581
intB
Position (kb) 729
730 Strain fitness (log2 ratio) -1
0
1
2
3 at 728.476 kb on - strand at 728.480 kb on - strand at 728.508 kb on + strand at 728.579 kb on - strand at 728.654 kb on + strand at 728.985 kb on - strand at 728.985 kb on - strand at 728.985 kb on - strand at 729.109 kb on + strand at 729.304 kb on + strand at 729.305 kb on - strand at 729.305 kb on - strand at 729.316 kb on + strand at 729.317 kb on - strand at 729.323 kb on + strand at 729.324 kb on - strand at 729.324 kb on - strand at 729.364 kb on + strand at 729.364 kb on + strand at 729.365 kb on - strand at 729.430 kb on + strand at 729.594 kb on + strand, within HEPCGN_09920 at 729.595 kb on - strand, within HEPCGN_09920 at 729.595 kb on - strand, within HEPCGN_09920 at 729.651 kb on + strand, within HEPCGN_09920 at 729.651 kb on + strand, within HEPCGN_09920 at 729.726 kb on + strand, within HEPCGN_09920 at 729.727 kb on - strand, within HEPCGN_09920 at 729.728 kb on + strand, within HEPCGN_09920 at 729.728 kb on + strand, within HEPCGN_09920 at 729.728 kb on + strand, within HEPCGN_09920 at 729.728 kb on + strand, within HEPCGN_09920 at 729.734 kb on - strand, within HEPCGN_09920 at 729.775 kb on + strand at 729.775 kb on + strand at 729.776 kb on - strand at 729.788 kb on + strand at 729.788 kb on + strand at 729.789 kb on - strand at 729.789 kb on - strand at 730.347 kb on + strand at 730.348 kb on - strand at 730.406 kb on + strand at 730.449 kb on + strand, within intB at 730.449 kb on + strand, within intB at 730.449 kb on + strand, within intB at 730.538 kb on - strand, within intB at 730.588 kb on - strand, within intB at 730.614 kb on - strand, within intB at 730.614 kb on - strand, within intB at 730.614 kb on - strand, within intB at 730.661 kb on + strand, within intB at 730.662 kb on - strand, within intB at 730.733 kb on + strand, within intB at 730.733 kb on + strand, within intB at 730.734 kb on - strand, within intB at 730.787 kb on - strand, within intB
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 728,476 - +1.1 728,480 - -0.1 728,508 + +0.1 728,579 - +0.4 728,654 + +3.2 728,985 - +1.3 728,985 - +0.7 728,985 - -0.1 729,109 + +0.8 729,304 + +1.3 729,305 - +3.2 729,305 - +0.2 729,316 + -0.7 729,317 - +1.4 729,323 + -0.9 729,324 - +0.4 729,324 - -0.0 729,364 + -0.3 729,364 + +0.2 729,365 - +0.1 729,430 + -0.8 729,594 + HEPCGN_09920 0.41 +0.3 729,595 - HEPCGN_09920 0.41 -1.1 729,595 - HEPCGN_09920 0.41 -0.6 729,651 + HEPCGN_09920 0.58 +0.4 729,651 + HEPCGN_09920 0.58 -0.1 729,726 + HEPCGN_09920 0.80 -0.6 729,727 - HEPCGN_09920 0.81 -0.2 729,728 + HEPCGN_09920 0.81 +0.5 729,728 + HEPCGN_09920 0.81 -0.2 729,728 + HEPCGN_09920 0.81 -0.8 729,728 + HEPCGN_09920 0.81 +0.0 729,734 - HEPCGN_09920 0.83 +1.0 729,775 + +0.2 729,775 + +1.1 729,776 - -1.5 729,788 + -0.9 729,788 + -1.6 729,789 - +0.0 729,789 - -0.2 730,347 + +0.3 730,348 - -0.0 730,406 + +0.4 730,449 + intB HEPCGN_09925 0.11 -0.3 730,449 + intB HEPCGN_09925 0.11 -0.8 730,449 + intB HEPCGN_09925 0.11 -0.2 730,538 - intB HEPCGN_09925 0.18 +0.9 730,588 - intB HEPCGN_09925 0.21 -0.2 730,614 - intB HEPCGN_09925 0.24 +0.8 730,614 - intB HEPCGN_09925 0.24 -0.4 730,614 - intB HEPCGN_09925 0.24 +0.3 730,661 + intB HEPCGN_09925 0.27 +0.0 730,662 - intB HEPCGN_09925 0.27 +0.1 730,733 + intB HEPCGN_09925 0.33 -1.0 730,733 + intB HEPCGN_09925 0.33 +0.9 730,734 - intB HEPCGN_09925 0.33 -1.1 730,787 - intB HEPCGN_09925 0.37 +1.4
Or see this region's nucleotide sequence