Strain Fitness in Escherichia coli ECOR38 around HEPCGN_09915
Experiment: K5
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | K5 |
|---|---|---|---|---|---|
| remove | |||||
| 725,514 | + | yjhC | HEPCGN_09910 | 0.21 | -0.8 |
| 725,514 | + | yjhC | HEPCGN_09910 | 0.21 | +0.2 |
| 725,515 | - | yjhC | HEPCGN_09910 | 0.21 | +0.5 |
| 725,522 | - | yjhC | HEPCGN_09910 | 0.21 | -0.2 |
| 725,685 | + | yjhC | HEPCGN_09910 | 0.36 | -0.1 |
| 725,686 | - | yjhC | HEPCGN_09910 | 0.36 | -1.5 |
| 725,758 | + | yjhC | HEPCGN_09910 | 0.43 | +0.9 |
| 725,759 | - | yjhC | HEPCGN_09910 | 0.43 | +0.4 |
| 725,762 | + | yjhC | HEPCGN_09910 | 0.43 | +0.3 |
| 725,768 | - | yjhC | HEPCGN_09910 | 0.43 | -0.4 |
| 725,876 | + | yjhC | HEPCGN_09910 | 0.53 | +0.4 |
| 725,877 | - | yjhC | HEPCGN_09910 | 0.53 | -0.2 |
| 725,887 | - | yjhC | HEPCGN_09910 | 0.54 | -0.9 |
| 725,888 | + | yjhC | HEPCGN_09910 | 0.54 | -0.9 |
| 726,257 | - | yjhC | HEPCGN_09910 | 0.87 | +0.1 |
| 726,257 | - | yjhC | HEPCGN_09910 | 0.87 | +0.6 |
| 726,451 | - | -0.1 | |||
| 726,539 | + | yjhB | HEPCGN_09915 | 0.10 | -0.1 |
| 726,548 | - | yjhB | HEPCGN_09915 | 0.11 | -0.0 |
| 726,635 | + | yjhB | HEPCGN_09915 | 0.18 | +0.1 |
| 726,802 | - | yjhB | HEPCGN_09915 | 0.32 | -1.2 |
| 727,032 | - | yjhB | HEPCGN_09915 | 0.51 | -1.3 |
| 727,216 | - | yjhB | HEPCGN_09915 | 0.66 | +0.2 |
| 727,321 | + | yjhB | HEPCGN_09915 | 0.75 | -0.5 |
| 727,746 | + | -0.4 | |||
| 727,947 | - | -0.5 | |||
| 727,957 | + | +0.9 | |||
| 728,024 | - | -0.7 | |||
| 728,144 | - | +0.4 | |||
| 728,151 | + | +0.3 | |||
| 728,176 | - | +0.4 | |||
| 728,176 | - | +0.2 | |||
| 728,198 | + | +0.1 | |||
| 728,223 | + | -0.4 | |||
| 728,309 | + | +0.1 | |||
| 728,309 | + | -0.1 | |||
| 728,318 | + | +1.3 | |||
| 728,319 | - | -0.3 | |||
| 728,319 | - | -0.1 | |||
| 728,352 | + | +0.4 | |||
| 728,353 | - | -0.5 | |||
| 728,369 | - | -0.2 | |||
| 728,369 | - | +0.1 | |||
| 728,422 | + | +0.1 | |||
| 728,422 | + | -1.0 | |||
| 728,422 | + | +0.4 | |||
| 728,422 | + | -0.6 | |||
| 728,422 | + | -0.1 | |||
| 728,422 | + | +1.5 | |||
| 728,423 | - | -0.6 | |||
| 728,423 | - | -0.3 | |||
| 728,423 | - | +1.1 | |||
| 728,423 | - | +1.0 | |||
| 728,423 | - | +0.0 | |||
| 728,423 | - | -0.1 | |||
| 728,424 | + | -1.2 | |||
| 728,476 | - | +1.1 | |||
| 728,480 | - | -0.1 | |||
| 728,508 | + | +0.1 | |||
| 728,579 | - | +0.4 |
Or see this region's nucleotide sequence