Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_09895 and HEPCGN_09900 are separated by 220 nucleotides HEPCGN_09900 and ythA are separated by 52 nucleotides ythA and yjhC are separated by 42 nucleotides
HEPCGN_09895: HEPCGN_09895 - Transposase, at 724,314 to 724,490
_09895
HEPCGN_09900: HEPCGN_09900 - YjhD, at 724,711 to 725,061
_09900
HEPCGN_09905: ythA - Uncharacterized protein YthA, at 725,114 to 725,239
ythA
HEPCGN_09910: yjhC - Uncharacterized oxidoreductase YjhC, at 725,282 to 726,400
yjhC
Position (kb) 725
726 Strain fitness (log2 ratio) -1
0
1
2 at 724.170 kb on + strand at 724.175 kb on + strand at 724.176 kb on - strand at 724.176 kb on - strand at 724.176 kb on - strand at 724.292 kb on - strand at 724.313 kb on - strand at 724.404 kb on - strand, within HEPCGN_09895 at 724.510 kb on + strand at 724.522 kb on - strand at 724.619 kb on + strand at 724.625 kb on + strand at 724.649 kb on - strand at 724.710 kb on - strand at 724.763 kb on - strand, within HEPCGN_09900 at 724.772 kb on + strand, within HEPCGN_09900 at 724.905 kb on + strand, within HEPCGN_09900 at 724.992 kb on + strand, within HEPCGN_09900 at 725.007 kb on - strand, within HEPCGN_09900 at 725.056 kb on - strand at 725.066 kb on + strand at 725.087 kb on + strand at 725.087 kb on + strand at 725.091 kb on + strand at 725.288 kb on + strand at 725.296 kb on + strand at 725.296 kb on + strand at 725.408 kb on - strand, within yjhC at 725.409 kb on + strand, within yjhC at 725.514 kb on + strand, within yjhC at 725.514 kb on + strand, within yjhC at 725.515 kb on - strand, within yjhC at 725.522 kb on - strand, within yjhC at 725.685 kb on + strand, within yjhC at 725.686 kb on - strand, within yjhC at 725.758 kb on + strand, within yjhC at 725.759 kb on - strand, within yjhC at 725.762 kb on + strand, within yjhC at 725.768 kb on - strand, within yjhC at 725.876 kb on + strand, within yjhC at 725.877 kb on - strand, within yjhC at 725.887 kb on - strand, within yjhC at 725.888 kb on + strand, within yjhC
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 724,170 + +0.5 724,175 + +0.9 724,176 - -0.7 724,176 - +1.8 724,176 - -0.2 724,292 - -0.1 724,313 - +0.2 724,404 - HEPCGN_09895 0.51 +0.4 724,510 + -0.5 724,522 - -0.4 724,619 + +0.1 724,625 + -0.7 724,649 - +0.6 724,710 - -0.3 724,763 - HEPCGN_09900 0.15 -0.5 724,772 + HEPCGN_09900 0.17 -0.4 724,905 + HEPCGN_09900 0.55 +0.2 724,992 + HEPCGN_09900 0.80 +2.0 725,007 - HEPCGN_09900 0.84 -0.5 725,056 - -0.0 725,066 + +0.0 725,087 + +0.0 725,087 + -1.0 725,091 + -0.4 725,288 + -0.5 725,296 + +1.2 725,296 + -0.8 725,408 - yjhC HEPCGN_09910 0.11 -1.6 725,409 + yjhC HEPCGN_09910 0.11 -0.4 725,514 + yjhC HEPCGN_09910 0.21 -0.8 725,514 + yjhC HEPCGN_09910 0.21 +0.2 725,515 - yjhC HEPCGN_09910 0.21 +0.5 725,522 - yjhC HEPCGN_09910 0.21 -0.2 725,685 + yjhC HEPCGN_09910 0.36 -0.1 725,686 - yjhC HEPCGN_09910 0.36 -1.5 725,758 + yjhC HEPCGN_09910 0.43 +0.9 725,759 - yjhC HEPCGN_09910 0.43 +0.4 725,762 + yjhC HEPCGN_09910 0.43 +0.3 725,768 - yjhC HEPCGN_09910 0.43 -0.4 725,876 + yjhC HEPCGN_09910 0.53 +0.4 725,877 - yjhC HEPCGN_09910 0.53 -0.2 725,887 - yjhC HEPCGN_09910 0.54 -0.9 725,888 + yjhC HEPCGN_09910 0.54 -0.9
Or see this region's nucleotide sequence