Strain Fitness in Escherichia coli ECOR38 around HEPCGN_07460
Experiment: K5
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | K5 |
|---|---|---|---|---|---|
| remove | |||||
| 227,290 | + | cynR | HEPCGN_07455 | 0.13 | -0.6 |
| 227,303 | - | cynR | HEPCGN_07455 | 0.14 | +2.0 |
| 227,373 | + | cynR | HEPCGN_07455 | 0.22 | -0.2 |
| 227,478 | - | cynR | HEPCGN_07455 | 0.34 | +0.3 |
| 227,669 | - | cynR | HEPCGN_07455 | 0.55 | +1.0 |
| 227,675 | - | cynR | HEPCGN_07455 | 0.56 | +0.2 |
| 227,794 | - | cynR | HEPCGN_07455 | 0.69 | +0.2 |
| 227,813 | - | cynR | HEPCGN_07455 | 0.71 | -0.5 |
| 227,991 | - | -1.9 | |||
| 228,023 | - | +0.3 | |||
| 228,039 | - | -0.0 | |||
| 228,101 | - | +1.8 | |||
| 228,132 | - | -1.1 | |||
| 228,174 | + | -0.9 | |||
| 228,175 | - | -0.3 | |||
| 228,245 | - | +0.4 | |||
| 228,245 | - | -0.4 | |||
| 228,246 | + | +0.2 | |||
| 228,247 | - | +1.2 | |||
| 228,295 | - | +0.1 | |||
| 228,492 | - | codA | HEPCGN_07460 | 0.22 | -1.6 |
| 228,626 | + | codA | HEPCGN_07460 | 0.33 | +0.3 |
| 228,677 | + | codA | HEPCGN_07460 | 0.37 | +0.8 |
| 228,716 | + | codA | HEPCGN_07460 | 0.40 | +1.7 |
| 228,731 | - | codA | HEPCGN_07460 | 0.41 | -0.0 |
| 228,894 | - | codA | HEPCGN_07460 | 0.54 | +0.2 |
| 228,894 | - | codA | HEPCGN_07460 | 0.54 | +0.9 |
| 228,894 | - | codA | HEPCGN_07460 | 0.54 | -0.3 |
| 229,127 | + | codA | HEPCGN_07460 | 0.72 | -1.2 |
| 229,333 | - | codA | HEPCGN_07460 | 0.88 | +1.5 |
| 229,449 | + | -0.1 | |||
| 229,463 | + | +0.4 | |||
| 229,464 | - | -0.1 | |||
| 229,528 | - | -0.6 | |||
| 229,557 | - | +0.4 | |||
| 229,573 | + | -0.1 | |||
| 229,573 | + | -0.0 | |||
| 229,692 | - | codB | HEPCGN_07465 | 0.17 | +0.8 |
| 229,712 | + | codB | HEPCGN_07465 | 0.18 | +0.9 |
| 229,787 | + | codB | HEPCGN_07465 | 0.24 | +1.0 |
| 229,787 | + | codB | HEPCGN_07465 | 0.24 | +0.3 |
| 229,788 | - | codB | HEPCGN_07465 | 0.24 | -0.2 |
| 229,788 | - | codB | HEPCGN_07465 | 0.24 | +1.4 |
| 229,795 | + | codB | HEPCGN_07465 | 0.25 | -0.3 |
| 229,887 | - | codB | HEPCGN_07465 | 0.32 | -0.0 |
| 230,128 | - | codB | HEPCGN_07465 | 0.51 | -0.6 |
| 230,168 | - | codB | HEPCGN_07465 | 0.55 | -2.7 |
| 230,330 | - | codB | HEPCGN_07465 | 0.67 | +1.6 |
| 230,355 | + | codB | HEPCGN_07465 | 0.69 | +0.3 |
Or see this region's nucleotide sequence