Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pphA and yebW are separated by 0 nucleotides yebW and yebV are separated by 20 nucleotides yebV and rsmF are separated by 117 nucleotides
HEPCGN_04825: pphA - protein-serine/threonine phosphatase, at 839,834 to 840,490
pphA
HEPCGN_04830: yebW - Uncharacterized protein YebW, at 840,491 to 840,766
yebW
HEPCGN_04835: yebV - Uncharacterized protein YebV, at 840,787 to 841,023
yebV
HEPCGN_04840: rsmF - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 841,141 to 842,586
rsmF
Position (kb) 840
841 Strain fitness (log2 ratio) -2
-1
0
1 at 839.516 kb on + strand at 839.517 kb on - strand at 839.585 kb on + strand at 839.707 kb on - strand at 839.737 kb on + strand at 839.738 kb on - strand at 839.749 kb on + strand at 839.761 kb on + strand at 839.762 kb on - strand at 839.829 kb on + strand at 839.907 kb on + strand, within pphA at 839.907 kb on + strand, within pphA at 839.908 kb on - strand, within pphA at 839.908 kb on - strand, within pphA at 839.908 kb on - strand, within pphA at 839.908 kb on - strand, within pphA at 839.973 kb on + strand, within pphA at 839.973 kb on + strand, within pphA at 839.978 kb on - strand, within pphA at 839.978 kb on - strand, within pphA at 840.061 kb on - strand, within pphA at 840.145 kb on + strand, within pphA at 840.161 kb on + strand, within pphA at 840.162 kb on - strand, within pphA at 840.162 kb on - strand, within pphA at 840.203 kb on + strand, within pphA at 840.203 kb on + strand, within pphA at 840.226 kb on - strand, within pphA at 840.281 kb on + strand, within pphA at 840.281 kb on + strand, within pphA at 840.282 kb on - strand, within pphA at 840.336 kb on + strand, within pphA at 840.365 kb on - strand, within pphA at 840.394 kb on + strand, within pphA at 840.395 kb on - strand, within pphA at 840.395 kb on - strand, within pphA at 840.434 kb on + strand at 840.437 kb on - strand at 840.437 kb on - strand at 840.488 kb on + strand at 840.533 kb on + strand, within yebW at 840.534 kb on - strand, within yebW at 840.586 kb on + strand, within yebW at 840.587 kb on - strand, within yebW at 840.591 kb on + strand, within yebW at 840.655 kb on - strand, within yebW at 840.877 kb on - strand, within yebV at 840.877 kb on - strand, within yebV at 840.909 kb on + strand, within yebV at 840.913 kb on + strand, within yebV at 841.088 kb on + strand at 841.259 kb on - strand at 841.271 kb on - strand at 841.407 kb on + strand, within rsmF at 841.616 kb on + strand, within rsmF at 841.630 kb on + strand, within rsmF at 841.735 kb on - strand, within rsmF at 841.735 kb on - strand, within rsmF
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 839,516 + +0.8 839,517 - +1.4 839,585 + -0.1 839,707 - +0.1 839,737 + +1.2 839,738 - -0.3 839,749 + -0.8 839,761 + +0.6 839,762 - -1.1 839,829 + -0.7 839,907 + pphA HEPCGN_04825 0.11 -0.1 839,907 + pphA HEPCGN_04825 0.11 +0.8 839,908 - pphA HEPCGN_04825 0.11 -1.6 839,908 - pphA HEPCGN_04825 0.11 +1.0 839,908 - pphA HEPCGN_04825 0.11 -0.0 839,908 - pphA HEPCGN_04825 0.11 -0.1 839,973 + pphA HEPCGN_04825 0.21 -0.8 839,973 + pphA HEPCGN_04825 0.21 -0.1 839,978 - pphA HEPCGN_04825 0.22 -0.1 839,978 - pphA HEPCGN_04825 0.22 +0.7 840,061 - pphA HEPCGN_04825 0.35 +0.7 840,145 + pphA HEPCGN_04825 0.47 +0.4 840,161 + pphA HEPCGN_04825 0.50 +0.5 840,162 - pphA HEPCGN_04825 0.50 -1.3 840,162 - pphA HEPCGN_04825 0.50 -0.2 840,203 + pphA HEPCGN_04825 0.56 -1.5 840,203 + pphA HEPCGN_04825 0.56 -0.4 840,226 - pphA HEPCGN_04825 0.60 +0.1 840,281 + pphA HEPCGN_04825 0.68 -0.5 840,281 + pphA HEPCGN_04825 0.68 -0.4 840,282 - pphA HEPCGN_04825 0.68 +1.2 840,336 + pphA HEPCGN_04825 0.76 -1.7 840,365 - pphA HEPCGN_04825 0.81 -0.7 840,394 + pphA HEPCGN_04825 0.85 -1.3 840,395 - pphA HEPCGN_04825 0.85 +0.1 840,395 - pphA HEPCGN_04825 0.85 -0.3 840,434 + +0.8 840,437 - +0.4 840,437 - -1.1 840,488 + -0.5 840,533 + yebW HEPCGN_04830 0.15 +0.4 840,534 - yebW HEPCGN_04830 0.16 +0.5 840,586 + yebW HEPCGN_04830 0.34 -0.4 840,587 - yebW HEPCGN_04830 0.35 +1.5 840,591 + yebW HEPCGN_04830 0.36 -0.3 840,655 - yebW HEPCGN_04830 0.59 +1.4 840,877 - yebV HEPCGN_04835 0.38 -2.3 840,877 - yebV HEPCGN_04835 0.38 +0.2 840,909 + yebV HEPCGN_04835 0.51 +0.0 840,913 + yebV HEPCGN_04835 0.53 -1.5 841,088 + +1.0 841,259 - -0.0 841,271 - -0.0 841,407 + rsmF HEPCGN_04840 0.18 +1.6 841,616 + rsmF HEPCGN_04840 0.33 +1.0 841,630 + rsmF HEPCGN_04840 0.34 -0.5 841,735 - rsmF HEPCGN_04840 0.41 +0.3 841,735 - rsmF HEPCGN_04840 0.41 -0.5
Or see this region's nucleotide sequence