Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ruvB and znuB are separated by 147 nucleotides znuB and znuC overlap by 4 nucleotides znuC and znuA are separated by 24 nucleotides
HEPCGN_04695: ruvB - Holliday junction branch migration DNA helicase RuvB, at 817,452 to 818,462
ruvB
HEPCGN_04700: znuB - zinc ABC transporter permease subunit ZnuB, at 818,610 to 819,395
znuB
HEPCGN_04705: znuC - zinc ABC transporter ATP-binding protein ZnuC, at 819,392 to 820,147
znuC
HEPCGN_04710: znuA - zinc ABC transporter substrate-binding protein ZnuA, at 820,172 to 821,158
znuA
Position (kb) 818
819
820 Strain fitness (log2 ratio) -1
0
1
2
3 at 818.022 kb on + strand, within ruvB at 818.024 kb on + strand, within ruvB at 818.461 kb on - strand at 818.461 kb on - strand at 818.531 kb on - strand at 818.558 kb on + strand at 818.558 kb on + strand at 818.612 kb on - strand at 818.793 kb on - strand, within znuB at 819.009 kb on - strand, within znuB at 819.056 kb on - strand, within znuB at 819.093 kb on - strand, within znuB at 819.141 kb on + strand, within znuB at 819.180 kb on + strand, within znuB at 819.224 kb on - strand, within znuB at 819.287 kb on + strand, within znuB at 819.299 kb on - strand, within znuB at 819.306 kb on - strand, within znuB at 819.452 kb on - strand at 819.465 kb on + strand at 819.466 kb on - strand at 819.469 kb on + strand, within znuC at 819.503 kb on - strand, within znuC at 819.624 kb on - strand, within znuC at 819.662 kb on - strand, within znuC at 819.672 kb on - strand, within znuC at 819.848 kb on - strand, within znuC at 819.856 kb on + strand, within znuC at 819.857 kb on - strand, within znuC at 819.933 kb on - strand, within znuC at 819.933 kb on - strand, within znuC at 819.948 kb on - strand, within znuC at 820.021 kb on + strand, within znuC at 820.181 kb on + strand at 820.208 kb on - strand at 820.380 kb on + strand, within znuA
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 818,022 + ruvB HEPCGN_04695 0.56 +0.1 818,024 + ruvB HEPCGN_04695 0.57 -1.5 818,461 - +0.4 818,461 - +0.6 818,531 - +3.7 818,558 + +1.8 818,558 + -0.8 818,612 - +0.3 818,793 - znuB HEPCGN_04700 0.23 +0.7 819,009 - znuB HEPCGN_04700 0.51 -0.5 819,056 - znuB HEPCGN_04700 0.57 +0.6 819,093 - znuB HEPCGN_04700 0.61 -0.3 819,141 + znuB HEPCGN_04700 0.68 +0.7 819,180 + znuB HEPCGN_04700 0.73 +2.2 819,224 - znuB HEPCGN_04700 0.78 +0.2 819,287 + znuB HEPCGN_04700 0.86 -1.3 819,299 - znuB HEPCGN_04700 0.88 +0.9 819,306 - znuB HEPCGN_04700 0.89 +1.7 819,452 - -1.2 819,465 + -1.3 819,466 - +0.2 819,469 + znuC HEPCGN_04705 0.10 -0.2 819,503 - znuC HEPCGN_04705 0.15 +0.1 819,624 - znuC HEPCGN_04705 0.31 -0.4 819,662 - znuC HEPCGN_04705 0.36 +1.1 819,672 - znuC HEPCGN_04705 0.37 -0.1 819,848 - znuC HEPCGN_04705 0.60 +1.6 819,856 + znuC HEPCGN_04705 0.61 +0.4 819,857 - znuC HEPCGN_04705 0.62 +0.1 819,933 - znuC HEPCGN_04705 0.72 +0.2 819,933 - znuC HEPCGN_04705 0.72 -0.4 819,948 - znuC HEPCGN_04705 0.74 +1.6 820,021 + znuC HEPCGN_04705 0.83 +1.6 820,181 + -1.7 820,208 - -0.4 820,380 + znuA HEPCGN_04710 0.21 -1.0
Or see this region's nucleotide sequence