Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04535

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmotA and motB overlap by 4 nucleotidesmotB and cheA are separated by 4 nucleotides HEPCGN_04530: motA - flagellar motor stator protein MotA, at 788,025 to 788,912 motA HEPCGN_04535: motB - flagellar motor protein MotB, at 788,909 to 789,835 motB HEPCGN_04540: cheA - chemotaxis protein CheA, at 789,840 to 791,804 cheA Position (kb) 788 789 790Strain fitness (log2 ratio) -2 -1 0 1at 787.973 kb on - strandat 788.030 kb on + strandat 788.038 kb on + strandat 788.043 kb on + strandat 788.109 kb on + strandat 788.109 kb on + strandat 788.232 kb on + strand, within motAat 788.247 kb on + strand, within motAat 788.247 kb on + strand, within motAat 788.248 kb on - strand, within motAat 788.250 kb on - strand, within motAat 788.324 kb on + strand, within motAat 788.399 kb on + strand, within motAat 788.410 kb on - strand, within motAat 788.576 kb on - strand, within motAat 788.705 kb on - strand, within motAat 788.705 kb on - strand, within motAat 789.007 kb on + strand, within motBat 789.053 kb on - strand, within motBat 789.053 kb on - strand, within motBat 789.202 kb on + strand, within motBat 789.203 kb on - strand, within motBat 789.203 kb on - strand, within motBat 789.351 kb on + strand, within motBat 789.356 kb on - strand, within motBat 789.392 kb on - strand, within motBat 789.392 kb on - strand, within motBat 789.419 kb on + strand, within motBat 789.464 kb on - strand, within motBat 789.475 kb on + strand, within motBat 789.476 kb on - strand, within motBat 789.493 kb on + strand, within motBat 789.494 kb on - strand, within motBat 789.532 kb on + strand, within motBat 790.100 kb on + strand, within cheAat 790.101 kb on - strand, within cheAat 790.152 kb on + strand, within cheAat 790.154 kb on + strand, within cheAat 790.192 kb on - strand, within cheAat 790.194 kb on - strand, within cheAat 790.304 kb on + strand, within cheAat 790.664 kb on + strand, within cheAat 790.664 kb on + strand, within cheA

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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787,973 - +0.1
788,030 + -1.8
788,038 + +0.8
788,043 + -0.4
788,109 + +0.4
788,109 + +0.9
788,232 + motA HEPCGN_04530 0.23 +1.0
788,247 + motA HEPCGN_04530 0.25 -2.6
788,247 + motA HEPCGN_04530 0.25 -1.3
788,248 - motA HEPCGN_04530 0.25 +0.9
788,250 - motA HEPCGN_04530 0.25 -1.0
788,324 + motA HEPCGN_04530 0.34 +0.1
788,399 + motA HEPCGN_04530 0.42 +0.0
788,410 - motA HEPCGN_04530 0.43 +1.5
788,576 - motA HEPCGN_04530 0.62 -0.0
788,705 - motA HEPCGN_04530 0.77 -0.2
788,705 - motA HEPCGN_04530 0.77 +1.0
789,007 + motB HEPCGN_04535 0.11 +0.5
789,053 - motB HEPCGN_04535 0.16 +0.3
789,053 - motB HEPCGN_04535 0.16 +1.3
789,202 + motB HEPCGN_04535 0.32 -0.5
789,203 - motB HEPCGN_04535 0.32 +0.1
789,203 - motB HEPCGN_04535 0.32 +0.3
789,351 + motB HEPCGN_04535 0.48 +1.2
789,356 - motB HEPCGN_04535 0.48 -1.4
789,392 - motB HEPCGN_04535 0.52 +0.0
789,392 - motB HEPCGN_04535 0.52 +0.8
789,419 + motB HEPCGN_04535 0.55 +1.2
789,464 - motB HEPCGN_04535 0.60 -0.1
789,475 + motB HEPCGN_04535 0.61 +0.3
789,476 - motB HEPCGN_04535 0.61 +0.2
789,493 + motB HEPCGN_04535 0.63 -1.4
789,494 - motB HEPCGN_04535 0.63 -1.0
789,532 + motB HEPCGN_04535 0.67 -0.5
790,100 + cheA HEPCGN_04540 0.13 -0.3
790,101 - cheA HEPCGN_04540 0.13 -0.6
790,152 + cheA HEPCGN_04540 0.16 -2.2
790,154 + cheA HEPCGN_04540 0.16 +1.3
790,192 - cheA HEPCGN_04540 0.18 +0.6
790,194 - cheA HEPCGN_04540 0.18 -0.5
790,304 + cheA HEPCGN_04540 0.24 -0.1
790,664 + cheA HEPCGN_04540 0.42 +0.7
790,664 + cheA HEPCGN_04540 0.42 +0.5

Or see this region's nucleotide sequence