Strain Fitness in Escherichia coli ECOR38 around HEPCGN_03770

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_03760 and HEPCGN_03765 overlap by 4 nucleotidesHEPCGN_03765 and HEPCGN_03770 are separated by 155 nucleotidesHEPCGN_03770 and HEPCGN_03775 are separated by 5 nucleotidesHEPCGN_03775 and HEPCGN_03780 are separated by 138 nucleotides HEPCGN_03760: HEPCGN_03760 - lysozyme, at 662,541 to 663,074 _03760 HEPCGN_03765: HEPCGN_03765 - lysis protein, at 663,071 to 663,538 _03765 HEPCGN_03770: HEPCGN_03770 - hypothetical protein, at 663,694 to 663,960 _03770 HEPCGN_03775: HEPCGN_03775 - hypothetical protein, at 663,966 to 664,505 _03775 HEPCGN_03780: HEPCGN_03780 - HNH endonuclease, at 664,644 to 664,994 _03780 Position (kb) 663 664Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 662.888 kb on + strand, within HEPCGN_03760at 662.910 kb on + strand, within HEPCGN_03760at 662.995 kb on + strand, within HEPCGN_03760at 662.996 kb on - strand, within HEPCGN_03760at 663.091 kb on + strandat 663.096 kb on - strandat 663.168 kb on - strand, within HEPCGN_03765at 663.510 kb on + strandat 663.512 kb on + strandat 663.512 kb on + strandat 663.513 kb on - strandat 663.513 kb on - strandat 663.513 kb on - strandat 663.602 kb on + strandat 663.603 kb on - strandat 663.603 kb on - strandat 663.603 kb on - strandat 663.610 kb on + strandat 663.610 kb on + strandat 663.614 kb on + strandat 663.615 kb on - strandat 663.644 kb on - strandat 663.644 kb on - strandat 663.714 kb on + strandat 663.725 kb on - strand, within HEPCGN_03770at 663.725 kb on - strand, within HEPCGN_03770at 663.725 kb on - strand, within HEPCGN_03770at 663.725 kb on - strand, within HEPCGN_03770at 663.725 kb on - strand, within HEPCGN_03770at 663.766 kb on - strand, within HEPCGN_03770at 663.811 kb on + strand, within HEPCGN_03770at 663.817 kb on + strand, within HEPCGN_03770at 663.817 kb on + strand, within HEPCGN_03770at 663.818 kb on - strand, within HEPCGN_03770at 663.819 kb on + strand, within HEPCGN_03770at 663.820 kb on - strand, within HEPCGN_03770at 663.820 kb on - strand, within HEPCGN_03770at 663.924 kb on - strand, within HEPCGN_03770at 663.925 kb on + strand, within HEPCGN_03770at 663.925 kb on + strand, within HEPCGN_03770at 663.926 kb on - strand, within HEPCGN_03770at 663.937 kb on - strandat 664.089 kb on - strand, within HEPCGN_03775at 664.101 kb on - strand, within HEPCGN_03775at 664.227 kb on + strand, within HEPCGN_03775at 664.245 kb on + strand, within HEPCGN_03775at 664.268 kb on + strand, within HEPCGN_03775at 664.304 kb on + strand, within HEPCGN_03775at 664.304 kb on + strand, within HEPCGN_03775at 664.394 kb on + strand, within HEPCGN_03775at 664.411 kb on + strand, within HEPCGN_03775at 664.411 kb on + strand, within HEPCGN_03775at 664.433 kb on + strand, within HEPCGN_03775at 664.449 kb on + strand, within HEPCGN_03775at 664.449 kb on + strand, within HEPCGN_03775at 664.496 kb on + strandat 664.510 kb on + strandat 664.575 kb on + strandat 664.590 kb on + strandat 664.603 kb on + strandat 664.628 kb on + strandat 664.629 kb on - strandat 664.629 kb on - strandat 664.630 kb on + strandat 664.630 kb on + strandat 664.630 kb on + strandat 664.631 kb on - strandat 664.632 kb on + strandat 664.692 kb on - strand, within HEPCGN_03780at 664.805 kb on - strand, within HEPCGN_03780at 664.817 kb on - strand, within HEPCGN_03780at 664.829 kb on + strand, within HEPCGN_03780

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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662,888 + HEPCGN_03760 0.65 -0.3
662,910 + HEPCGN_03760 0.69 +0.4
662,995 + HEPCGN_03760 0.85 +0.1
662,996 - HEPCGN_03760 0.85 +0.3
663,091 + -1.5
663,096 - -0.1
663,168 - HEPCGN_03765 0.21 -0.6
663,510 + -0.0
663,512 + +1.8
663,512 + -0.6
663,513 - +0.5
663,513 - -0.5
663,513 - +0.2
663,602 + -2.2
663,603 - +0.4
663,603 - -3.9
663,603 - -0.5
663,610 + -0.0
663,610 + -0.0
663,614 + +0.6
663,615 - -0.9
663,644 - +0.2
663,644 - +0.1
663,714 + +1.0
663,725 - HEPCGN_03770 0.12 +1.5
663,725 - HEPCGN_03770 0.12 +0.9
663,725 - HEPCGN_03770 0.12 -0.1
663,725 - HEPCGN_03770 0.12 +0.8
663,725 - HEPCGN_03770 0.12 +0.2
663,766 - HEPCGN_03770 0.27 +1.2
663,811 + HEPCGN_03770 0.44 -0.5
663,817 + HEPCGN_03770 0.46 +0.1
663,817 + HEPCGN_03770 0.46 -0.3
663,818 - HEPCGN_03770 0.46 +1.2
663,819 + HEPCGN_03770 0.47 +0.6
663,820 - HEPCGN_03770 0.47 -1.4
663,820 - HEPCGN_03770 0.47 -0.1
663,924 - HEPCGN_03770 0.86 -0.4
663,925 + HEPCGN_03770 0.87 +0.5
663,925 + HEPCGN_03770 0.87 +0.2
663,926 - HEPCGN_03770 0.87 +0.6
663,937 - +0.8
664,089 - HEPCGN_03775 0.23 +0.1
664,101 - HEPCGN_03775 0.25 +0.1
664,227 + HEPCGN_03775 0.48 +1.0
664,245 + HEPCGN_03775 0.52 +0.2
664,268 + HEPCGN_03775 0.56 -1.9
664,304 + HEPCGN_03775 0.63 -0.5
664,304 + HEPCGN_03775 0.63 -1.4
664,394 + HEPCGN_03775 0.79 -0.5
664,411 + HEPCGN_03775 0.82 -0.9
664,411 + HEPCGN_03775 0.82 +0.6
664,433 + HEPCGN_03775 0.86 -0.2
664,449 + HEPCGN_03775 0.89 -0.1
664,449 + HEPCGN_03775 0.89 -0.8
664,496 + +0.2
664,510 + +1.6
664,575 + +0.4
664,590 + -0.3
664,603 + -0.8
664,628 + -0.1
664,629 - -0.1
664,629 - +1.0
664,630 + +0.0
664,630 + +0.5
664,630 + -0.6
664,631 - +0.5
664,632 + -0.4
664,692 - HEPCGN_03780 0.14 +0.0
664,805 - HEPCGN_03780 0.46 -0.3
664,817 - HEPCGN_03780 0.49 +0.1
664,829 + HEPCGN_03780 0.53 +0.0

Or see this region's nucleotide sequence