Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_03660 and HEPCGN_03665 are separated by 80 nucleotides HEPCGN_03665 and HEPCGN_03670 overlap by 17 nucleotides HEPCGN_03670 and HEPCGN_03675 overlap by 20 nucleotides HEPCGN_03675 and HEPCGN_03680 are separated by 40 nucleotides
HEPCGN_03660: HEPCGN_03660 - transcriptional regulator, at 651,817 to 652,224
_03660
HEPCGN_03665: HEPCGN_03665 - transcriptional regulator, at 652,305 to 652,532
_03665
HEPCGN_03670: HEPCGN_03670 - Putative bacterial toxin ydaT, at 652,516 to 653,037
_03670
HEPCGN_03675: HEPCGN_03675 - Ybl78, at 653,018 to 653,983
_03675
HEPCGN_03680: HEPCGN_03680 - DUF977 domain-containing protein, at 654,024 to 654,446
_03680
Position (kb) 652
653
654 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 651.525 kb on + strand at 651.526 kb on - strand at 651.547 kb on + strand at 651.571 kb on - strand at 651.576 kb on + strand at 651.577 kb on - strand at 651.578 kb on + strand at 652.229 kb on - strand at 652.598 kb on + strand, within HEPCGN_03670 at 653.050 kb on + strand at 653.050 kb on + strand at 653.504 kb on - strand, within HEPCGN_03675 at 653.504 kb on - strand, within HEPCGN_03675 at 653.684 kb on + strand, within HEPCGN_03675
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 651,525 + -0.2 651,526 - +0.6 651,547 + +0.7 651,571 - +0.0 651,576 + -1.6 651,577 - +0.7 651,578 + +0.2 652,229 - -0.3 652,598 + HEPCGN_03670 0.16 -4.2 653,050 + -0.2 653,050 + +0.5 653,504 - HEPCGN_03675 0.50 +0.6 653,504 - HEPCGN_03675 0.50 -0.5 653,684 + HEPCGN_03675 0.69 +0.2
Or see this region's nucleotide sequence