Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydcZ and HEPCGN_03405 are separated by 53 nucleotides HEPCGN_03405 and HEPCGN_03410 are separated by 13 nucleotides HEPCGN_03410 and HEPCGN_03415 are separated by 185 nucleotides HEPCGN_03415 and yaiO are separated by 689 nucleotides
HEPCGN_03400: ydcZ - Putative inner membrane exporter, YdcZ, at 583,200 to 584,165
ydcZ
HEPCGN_03405: HEPCGN_03405 - cytoplasmic protein, at 584,219 to 584,977
_03405
HEPCGN_03410: HEPCGN_03410 - DeoR/GlpR transcriptional regulator, at 584,991 to 586,205
_03410
HEPCGN_03415: HEPCGN_03415 - DDE-Tnp-IS66-C domain-containing protein, at 586,391 to 586,507
_03415
HEPCGN_03420: yaiO - Outer membrane protein YaiO, at 587,197 to 587,928
yaiO
Position (kb) 584
585
586
587 Strain fitness (log2 ratio) -2
-1
0
1
2 at 583.995 kb on - strand, within ydcZ at 584.071 kb on - strand at 584.317 kb on + strand, within HEPCGN_03405 at 584.646 kb on + strand, within HEPCGN_03405 at 584.719 kb on + strand, within HEPCGN_03405 at 584.812 kb on + strand, within HEPCGN_03405 at 584.874 kb on + strand, within HEPCGN_03405 at 584.878 kb on + strand, within HEPCGN_03405 at 585.195 kb on - strand, within HEPCGN_03410 at 585.446 kb on + strand, within HEPCGN_03410 at 585.605 kb on - strand, within HEPCGN_03410 at 585.939 kb on - strand, within HEPCGN_03410 at 586.245 kb on - strand at 586.378 kb on + strand at 586.473 kb on + strand, within HEPCGN_03415 at 586.507 kb on + strand at 586.558 kb on + strand at 586.559 kb on - strand at 586.592 kb on + strand at 586.779 kb on - strand at 586.858 kb on + strand at 587.178 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 583,995 - ydcZ HEPCGN_03400 0.82 +0.4 584,071 - +0.1 584,317 + HEPCGN_03405 0.13 -1.0 584,646 + HEPCGN_03405 0.56 -0.1 584,719 + HEPCGN_03405 0.66 -0.4 584,812 + HEPCGN_03405 0.78 -0.3 584,874 + HEPCGN_03405 0.86 -0.2 584,878 + HEPCGN_03405 0.87 -0.8 585,195 - HEPCGN_03410 0.17 -0.5 585,446 + HEPCGN_03410 0.37 -0.9 585,605 - HEPCGN_03410 0.51 -0.2 585,939 - HEPCGN_03410 0.78 +1.4 586,245 - +2.0 586,378 + -0.8 586,473 + HEPCGN_03415 0.70 +1.5 586,507 + -1.8 586,558 + +0.7 586,559 - -1.2 586,592 + -0.8 586,779 - -0.4 586,858 + +0.2 587,178 + +0.6
Or see this region's nucleotide sequence