Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_03350 and HEPCGN_03355 are separated by 134 nucleotides HEPCGN_03355 and tra5 overlap by 35 nucleotides tra5 and ltrA are separated by 191 nucleotides
HEPCGN_03350: HEPCGN_03350 - hypothetical protein, at 575,973 to 576,530
_03350
HEPCGN_03355: HEPCGN_03355 - Ferredoxin reductase, at 576,665 to 577,399
_03355
HEPCGN_03360: tra5 - IS3 family transposase, at 577,365 to 577,736
tra5
HEPCGN_03365: ltrA - group II intron reverse transcriptase/maturase, at 577,928 to 579,451
ltrA
Position (kb) 576
577
578 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 575.678 kb on + strand at 575.679 kb on - strand at 575.679 kb on - strand at 575.842 kb on + strand at 576.112 kb on + strand, within HEPCGN_03350 at 576.198 kb on - strand, within HEPCGN_03350 at 576.198 kb on - strand, within HEPCGN_03350 at 576.198 kb on - strand, within HEPCGN_03350 at 576.202 kb on + strand, within HEPCGN_03350 at 576.202 kb on + strand, within HEPCGN_03350 at 576.203 kb on - strand, within HEPCGN_03350 at 576.215 kb on + strand, within HEPCGN_03350 at 576.353 kb on + strand, within HEPCGN_03350 at 576.473 kb on - strand, within HEPCGN_03350 at 576.592 kb on - strand at 576.842 kb on - strand, within HEPCGN_03355 at 577.231 kb on + strand, within HEPCGN_03355 at 577.231 kb on + strand, within HEPCGN_03355 at 577.234 kb on + strand, within HEPCGN_03355 at 577.235 kb on - strand, within HEPCGN_03355 at 577.273 kb on - strand, within HEPCGN_03355
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 575,678 + +0.5 575,679 - -1.0 575,679 - -0.2 575,842 + +0.2 576,112 + HEPCGN_03350 0.25 +0.3 576,198 - HEPCGN_03350 0.40 +0.8 576,198 - HEPCGN_03350 0.40 -0.8 576,198 - HEPCGN_03350 0.40 -0.1 576,202 + HEPCGN_03350 0.41 +1.4 576,202 + HEPCGN_03350 0.41 -0.2 576,203 - HEPCGN_03350 0.41 +0.4 576,215 + HEPCGN_03350 0.43 -0.1 576,353 + HEPCGN_03350 0.68 +3.8 576,473 - HEPCGN_03350 0.90 -0.6 576,592 - -1.3 576,842 - HEPCGN_03355 0.24 +0.6 577,231 + HEPCGN_03355 0.77 +0.0 577,231 + HEPCGN_03355 0.77 -0.0 577,234 + HEPCGN_03355 0.77 +3.1 577,235 - HEPCGN_03355 0.78 +0.4 577,273 - HEPCGN_03355 0.83 -0.1
Or see this region's nucleotide sequence