Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_03315 and HEPCGN_03320 are separated by 88 nucleotides HEPCGN_03320 and yeeT are separated by 193 nucleotides yeeT and yeeS are separated by 62 nucleotides yeeS and HEPCGN_03335 are separated by 14 nucleotides HEPCGN_03335 and HEPCGN_03340 are separated by 81 nucleotides
HEPCGN_03315: HEPCGN_03315 - toxin of the YeeV-YeeU toxin-antitoxin system, at 571,701 to 571,964
_03315
HEPCGN_03320: HEPCGN_03320 - Antitoxin of the YeeV-YeeU toxin-antitoxin system CP4-44 prophage, at 572,053 to 572,301
_03320
HEPCGN_03325: yeeT - Uncharacterized protein YeeT, at 572,495 to 572,716
yeeT
HEPCGN_03330: yeeS - UPF0758 protein YeeS, at 572,779 to 573,255
yeeS
HEPCGN_03335: HEPCGN_03335 - restriction endonuclease, at 573,270 to 573,749
_03335
HEPCGN_03340: HEPCGN_03340 - DUF945 domain-containing protein, at 573,831 to 574,652
_03340
Position (kb) 572
573
574 Strain fitness (log2 ratio) -1
0
1
2 at 571.893 kb on + strand, within HEPCGN_03315 at 571.893 kb on + strand, within HEPCGN_03315 at 571.893 kb on + strand, within HEPCGN_03315 at 571.894 kb on - strand, within HEPCGN_03315 at 571.948 kb on - strand at 571.992 kb on + strand at 571.992 kb on + strand at 572.079 kb on - strand, within HEPCGN_03320 at 572.526 kb on + strand, within yeeT at 572.581 kb on + strand, within yeeT at 572.604 kb on + strand, within yeeT at 572.604 kb on + strand, within yeeT at 572.641 kb on + strand, within yeeT at 572.872 kb on + strand, within yeeS at 573.259 kb on - strand at 573.288 kb on - strand at 573.385 kb on + strand, within HEPCGN_03335
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 571,893 + HEPCGN_03315 0.73 +1.1 571,893 + HEPCGN_03315 0.73 -1.4 571,893 + HEPCGN_03315 0.73 +0.1 571,894 - HEPCGN_03315 0.73 -0.5 571,948 - -0.4 571,992 + +1.5 571,992 + +0.2 572,079 - HEPCGN_03320 0.10 +0.5 572,526 + yeeT HEPCGN_03325 0.14 +0.2 572,581 + yeeT HEPCGN_03325 0.39 +2.1 572,604 + yeeT HEPCGN_03325 0.49 +0.4 572,604 + yeeT HEPCGN_03325 0.49 -0.3 572,641 + yeeT HEPCGN_03325 0.66 -0.2 572,872 + yeeS HEPCGN_03330 0.19 +1.2 573,259 - -0.3 573,288 - +0.4 573,385 + HEPCGN_03335 0.24 +0.2
Or see this region's nucleotide sequence