Strain Fitness in Escherichia coli ECOR38 around HEPCGN_02805

Experiment: K5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntgatZ and gatA are separated by 9 nucleotidesgatA and gatB are separated by 30 nucleotidesgatB and gatB are separated by 3 nucleotides HEPCGN_02800: gatZ - tagatose-bisphosphate aldolase subunit GatZ, at 470,310 to 471,572 gatZ HEPCGN_02805: gatA - PTS galactitol transporter subunit IIA, at 471,582 to 472,034 gatA HEPCGN_02810: gatB - PTS galactitol transporter subunit IIB, at 472,065 to 472,349 gatB HEPCGN_02815: gatB - PTS galactitol transporter subunit IIB, at 472,353 to 473,708 gatB Position (kb) 471 472 473Strain fitness (log2 ratio) -3 -2 -1 0 1at 470.647 kb on - strand, within gatZat 470.708 kb on + strand, within gatZat 470.806 kb on - strand, within gatZat 471.108 kb on + strand, within gatZat 471.294 kb on + strand, within gatZat 471.518 kb on + strandat 471.581 kb on + strandat 471.802 kb on - strand, within gatAat 471.809 kb on - strand, within gatAat 472.012 kb on - strandat 472.112 kb on + strand, within gatBat 472.520 kb on - strand, within gatBat 472.695 kb on - strand, within gatBat 472.708 kb on + strand, within gatBat 472.709 kb on - strand, within gatBat 472.718 kb on + strand, within gatBat 472.827 kb on - strand, within gatBat 472.886 kb on + strand, within gatBat 472.908 kb on + strand, within gatBat 472.908 kb on + strand, within gatBat 472.909 kb on - strand, within gatBat 472.911 kb on - strand, within gatBat 472.911 kb on - strand, within gatBat 472.940 kb on + strand, within gatBat 472.940 kb on + strand, within gatBat 472.940 kb on + strand, within gatBat 472.940 kb on + strand, within gatB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K5
remove
470,647 - gatZ HEPCGN_02800 0.27 +0.2
470,708 + gatZ HEPCGN_02800 0.32 -2.8
470,806 - gatZ HEPCGN_02800 0.39 +0.2
471,108 + gatZ HEPCGN_02800 0.63 +0.1
471,294 + gatZ HEPCGN_02800 0.78 +0.2
471,518 + +1.1
471,581 + +0.7
471,802 - gatA HEPCGN_02805 0.49 +0.5
471,809 - gatA HEPCGN_02805 0.50 +0.8
472,012 - -1.3
472,112 + gatB HEPCGN_02810 0.16 -0.2
472,520 - gatB HEPCGN_02815 0.12 +0.6
472,695 - gatB HEPCGN_02815 0.25 -0.9
472,708 + gatB HEPCGN_02815 0.26 +0.7
472,709 - gatB HEPCGN_02815 0.26 -0.5
472,718 + gatB HEPCGN_02815 0.27 +0.2
472,827 - gatB HEPCGN_02815 0.35 +0.0
472,886 + gatB HEPCGN_02815 0.39 -0.5
472,908 + gatB HEPCGN_02815 0.41 +0.3
472,908 + gatB HEPCGN_02815 0.41 -0.1
472,909 - gatB HEPCGN_02815 0.41 -0.3
472,911 - gatB HEPCGN_02815 0.41 +0.2
472,911 - gatB HEPCGN_02815 0.41 -0.2
472,940 + gatB HEPCGN_02815 0.43 -0.5
472,940 + gatB HEPCGN_02815 0.43 +1.5
472,940 + gatB HEPCGN_02815 0.43 +0.6
472,940 + gatB HEPCGN_02815 0.43 +1.1

Or see this region's nucleotide sequence