Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_02295 and HEPCGN_02300 overlap by 4 nucleotides HEPCGN_02300 and HEPCGN_02305 overlap by 14 nucleotides HEPCGN_02305 and HEPCGN_02310 overlap by 47 nucleotides HEPCGN_02310 and HEPCGN_02315 overlap by 11 nucleotides HEPCGN_02315 and HEPCGN_02320 are separated by 10 nucleotides HEPCGN_02320 and HEPCGN_02325 are separated by 5 nucleotides
HEPCGN_02295: HEPCGN_02295 - Ead/Ea22-like protein, at 380,957 to 381,493
_02295
HEPCGN_02300: HEPCGN_02300 - ead/Ea22-like family protein, at 381,490 to 382,176
_02300
HEPCGN_02305: HEPCGN_02305 - hypothetical protein, at 382,163 to 382,477
_02305
HEPCGN_02310: HEPCGN_02310 - DUF4752 domain-containing protein, at 382,431 to 382,748
_02310
HEPCGN_02315: HEPCGN_02315 - MarR family transcriptional regulator, at 382,738 to 382,986
_02315
HEPCGN_02320: HEPCGN_02320 - hypothetical protein, at 382,997 to 383,578
_02320
HEPCGN_02325: HEPCGN_02325 - hypothetical protein, at 383,584 to 383,772
_02325
Position (kb) 382
383 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 381.477 kb on + strand at 381.481 kb on + strand at 381.532 kb on + strand at 381.559 kb on + strand, within HEPCGN_02300 at 381.616 kb on - strand, within HEPCGN_02300 at 381.617 kb on + strand, within HEPCGN_02300 at 381.617 kb on + strand, within HEPCGN_02300 at 381.623 kb on + strand, within HEPCGN_02300 at 381.655 kb on + strand, within HEPCGN_02300 at 381.656 kb on - strand, within HEPCGN_02300 at 381.722 kb on - strand, within HEPCGN_02300 at 381.778 kb on + strand, within HEPCGN_02300 at 381.778 kb on + strand, within HEPCGN_02300 at 381.778 kb on + strand, within HEPCGN_02300 at 381.811 kb on - strand, within HEPCGN_02300 at 381.839 kb on - strand, within HEPCGN_02300 at 381.980 kb on + strand, within HEPCGN_02300 at 382.079 kb on + strand, within HEPCGN_02300 at 382.101 kb on + strand, within HEPCGN_02300 at 382.104 kb on + strand, within HEPCGN_02300 at 382.104 kb on + strand, within HEPCGN_02300 at 382.105 kb on - strand, within HEPCGN_02300 at 382.105 kb on - strand, within HEPCGN_02300 at 382.106 kb on + strand, within HEPCGN_02300 at 382.107 kb on - strand, within HEPCGN_02300 at 382.260 kb on + strand, within HEPCGN_02305 at 382.261 kb on - strand, within HEPCGN_02305 at 382.286 kb on - strand, within HEPCGN_02305 at 382.393 kb on - strand, within HEPCGN_02305 at 382.441 kb on - strand at 382.498 kb on - strand, within HEPCGN_02310 at 382.506 kb on + strand, within HEPCGN_02310 at 382.509 kb on + strand, within HEPCGN_02310 at 382.728 kb on + strand at 382.761 kb on + strand at 382.787 kb on - strand, within HEPCGN_02315 at 383.033 kb on - strand at 383.254 kb on - strand, within HEPCGN_02320 at 383.406 kb on - strand, within HEPCGN_02320 at 383.406 kb on - strand, within HEPCGN_02320 at 383.443 kb on + strand, within HEPCGN_02320 at 383.461 kb on + strand, within HEPCGN_02320 at 383.462 kb on - strand, within HEPCGN_02320 at 383.496 kb on - strand, within HEPCGN_02320
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 381,477 + +1.8 381,481 + -0.2 381,532 + -1.4 381,559 + HEPCGN_02300 0.10 +1.1 381,616 - HEPCGN_02300 0.18 -0.0 381,617 + HEPCGN_02300 0.18 -0.4 381,617 + HEPCGN_02300 0.18 +0.1 381,623 + HEPCGN_02300 0.19 +0.8 381,655 + HEPCGN_02300 0.24 -0.7 381,656 - HEPCGN_02300 0.24 -3.1 381,722 - HEPCGN_02300 0.34 -3.3 381,778 + HEPCGN_02300 0.42 +0.3 381,778 + HEPCGN_02300 0.42 -0.0 381,778 + HEPCGN_02300 0.42 +0.4 381,811 - HEPCGN_02300 0.47 -3.3 381,839 - HEPCGN_02300 0.51 -0.6 381,980 + HEPCGN_02300 0.71 -1.3 382,079 + HEPCGN_02300 0.86 -0.7 382,101 + HEPCGN_02300 0.89 +0.4 382,104 + HEPCGN_02300 0.89 -0.6 382,104 + HEPCGN_02300 0.89 +0.4 382,105 - HEPCGN_02300 0.90 -0.3 382,105 - HEPCGN_02300 0.90 -0.9 382,106 + HEPCGN_02300 0.90 -2.3 382,107 - HEPCGN_02300 0.90 -3.0 382,260 + HEPCGN_02305 0.31 +0.6 382,261 - HEPCGN_02305 0.31 +0.8 382,286 - HEPCGN_02305 0.39 -0.9 382,393 - HEPCGN_02305 0.73 -0.2 382,441 - +1.8 382,498 - HEPCGN_02310 0.21 -1.0 382,506 + HEPCGN_02310 0.24 -0.4 382,509 + HEPCGN_02310 0.25 -1.0 382,728 + +0.5 382,761 + -1.2 382,787 - HEPCGN_02315 0.20 -3.3 383,033 - -2.3 383,254 - HEPCGN_02320 0.44 -1.2 383,406 - HEPCGN_02320 0.70 -2.2 383,406 - HEPCGN_02320 0.70 +1.4 383,443 + HEPCGN_02320 0.77 -0.2 383,461 + HEPCGN_02320 0.80 -1.0 383,462 - HEPCGN_02320 0.80 +0.2 383,496 - HEPCGN_02320 0.86 -0.3
Or see this region's nucleotide sequence