Strain Fitness in Escherichia coli ECOR38 around HEPCGN_00370

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_00365 and HEPCGN_00370 are separated by 1 nucleotidesHEPCGN_00370 and HEPCGN_00375 are separated by 69 nucleotidesHEPCGN_00375 and HEPCGN_00380 are separated by 350 nucleotides HEPCGN_00365: HEPCGN_00365 - integrase, at 818 to 2,053 _00365 HEPCGN_00370: HEPCGN_00370 - Prophage CP4-57 regulatory protein (AlpA), at 2,055 to 2,282 _00370 HEPCGN_00375: HEPCGN_00375 - hypothetical protein, at 2,352 to 2,888 _00375 HEPCGN_00380: HEPCGN_00380 - hypothetical protein, at 3,239 to 3,541 _00380 Position (kb) 2 3Strain fitness (log2 ratio) -2 -1 0 1at 1.149 kb on + strand, within HEPCGN_00365at 1.174 kb on + strand, within HEPCGN_00365at 1.174 kb on + strand, within HEPCGN_00365at 1.186 kb on + strand, within HEPCGN_00365at 1.187 kb on - strand, within HEPCGN_00365at 1.235 kb on + strand, within HEPCGN_00365at 1.235 kb on + strand, within HEPCGN_00365at 1.269 kb on + strand, within HEPCGN_00365at 1.269 kb on + strand, within HEPCGN_00365at 1.269 kb on + strand, within HEPCGN_00365at 1.269 kb on + strand, within HEPCGN_00365at 1.270 kb on - strand, within HEPCGN_00365at 1.328 kb on + strand, within HEPCGN_00365at 1.515 kb on + strand, within HEPCGN_00365at 1.558 kb on - strand, within HEPCGN_00365at 1.558 kb on - strand, within HEPCGN_00365at 1.736 kb on + strand, within HEPCGN_00365at 1.760 kb on - strand, within HEPCGN_00365at 1.770 kb on + strand, within HEPCGN_00365at 1.828 kb on - strand, within HEPCGN_00365at 1.852 kb on + strand, within HEPCGN_00365at 1.860 kb on + strand, within HEPCGN_00365at 1.883 kb on + strand, within HEPCGN_00365at 1.884 kb on - strand, within HEPCGN_00365at 1.935 kb on - strandat 1.991 kb on + strandat 2.000 kb on - strandat 2.095 kb on - strand, within HEPCGN_00370at 2.388 kb on + strandat 3.124 kb on + strandat 3.237 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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1,149 + HEPCGN_00365 0.27 +0.4
1,174 + HEPCGN_00365 0.29 +0.1
1,174 + HEPCGN_00365 0.29 -0.6
1,186 + HEPCGN_00365 0.30 -0.6
1,187 - HEPCGN_00365 0.30 -1.4
1,235 + HEPCGN_00365 0.34 -0.4
1,235 + HEPCGN_00365 0.34 -0.1
1,269 + HEPCGN_00365 0.36 +0.3
1,269 + HEPCGN_00365 0.36 +1.3
1,269 + HEPCGN_00365 0.36 +0.3
1,269 + HEPCGN_00365 0.36 -0.6
1,270 - HEPCGN_00365 0.37 -1.8
1,328 + HEPCGN_00365 0.41 +0.6
1,515 + HEPCGN_00365 0.56 -0.7
1,558 - HEPCGN_00365 0.60 +0.1
1,558 - HEPCGN_00365 0.60 +1.4
1,736 + HEPCGN_00365 0.74 +0.9
1,760 - HEPCGN_00365 0.76 +0.2
1,770 + HEPCGN_00365 0.77 -0.1
1,828 - HEPCGN_00365 0.82 +0.5
1,852 + HEPCGN_00365 0.84 -0.7
1,860 + HEPCGN_00365 0.84 -1.2
1,883 + HEPCGN_00365 0.86 -0.0
1,884 - HEPCGN_00365 0.86 -0.4
1,935 - -0.1
1,991 + +0.5
2,000 - +0.2
2,095 - HEPCGN_00370 0.18 -0.7
2,388 + +0.3
3,124 + -0.3
3,237 - -1.2

Or see this region's nucleotide sequence