Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_00355 and HEPCGN_00360 are separated by 56 nucleotides HEPCGN_00360 and HEPCGN_00365 are separated by 132 nucleotides
HEPCGN_00355: HEPCGN_00355 - head decoration protein, at 21 to 353
_00355
HEPCGN_00360: HEPCGN_00360 - Capsid protein, at 410 to 685
_00360
HEPCGN_00365: HEPCGN_00365 - integrase, at 818 to 2,053
_00365
Position (kb) 0
1 Strain fitness (log2 ratio) -2
-1
0
1 at 0.009 kb on + strand at 0.009 kb on + strand at 0.009 kb on + strand at 0.020 kb on + strand at 0.246 kb on + strand, within HEPCGN_00355 at 0.246 kb on + strand, within HEPCGN_00355 at 0.357 kb on + strand at 0.371 kb on - strand at 0.419 kb on + strand at 0.658 kb on - strand at 0.861 kb on - strand at 0.931 kb on + strand at 0.931 kb on + strand at 0.932 kb on - strand at 0.959 kb on + strand, within HEPCGN_00365 at 0.959 kb on + strand, within HEPCGN_00365 at 1.011 kb on - strand, within HEPCGN_00365 at 1.149 kb on + strand, within HEPCGN_00365 at 1.174 kb on + strand, within HEPCGN_00365 at 1.174 kb on + strand, within HEPCGN_00365 at 1.186 kb on + strand, within HEPCGN_00365 at 1.187 kb on - strand, within HEPCGN_00365 at 1.235 kb on + strand, within HEPCGN_00365 at 1.235 kb on + strand, within HEPCGN_00365 at 1.269 kb on + strand, within HEPCGN_00365 at 1.269 kb on + strand, within HEPCGN_00365 at 1.269 kb on + strand, within HEPCGN_00365 at 1.269 kb on + strand, within HEPCGN_00365 at 1.270 kb on - strand, within HEPCGN_00365 at 1.328 kb on + strand, within HEPCGN_00365
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 9 + +0.6 9 + +0.6 9 + +1.1 20 + +0.2 246 + HEPCGN_00355 0.68 -0.6 246 + HEPCGN_00355 0.68 -1.6 357 + +0.1 371 - -1.0 419 + +0.2 658 - -0.7 861 - -0.2 931 + -1.2 931 + -2.4 932 - +0.0 959 + HEPCGN_00365 0.11 +0.0 959 + HEPCGN_00365 0.11 +1.6 1,011 - HEPCGN_00365 0.16 +0.3 1,149 + HEPCGN_00365 0.27 +0.4 1,174 + HEPCGN_00365 0.29 +0.1 1,174 + HEPCGN_00365 0.29 -0.6 1,186 + HEPCGN_00365 0.30 -0.6 1,187 - HEPCGN_00365 0.30 -1.4 1,235 + HEPCGN_00365 0.34 -0.4 1,235 + HEPCGN_00365 0.34 -0.1 1,269 + HEPCGN_00365 0.36 +0.3 1,269 + HEPCGN_00365 0.36 +1.3 1,269 + HEPCGN_00365 0.36 +0.3 1,269 + HEPCGN_00365 0.36 -0.6 1,270 - HEPCGN_00365 0.37 -1.8 1,328 + HEPCGN_00365 0.41 +0.6
Or see this region's nucleotide sequence