Strain Fitness in Escherichia coli ECOR38 around HEPCGN_26385
Experiment: K5
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | K5 |
---|---|---|---|---|---|
remove | |||||
4,025,287 | + | espR1 | HEPCGN_26380 | 0.63 | +0.3 |
4,025,901 | + | -0.4 | |||
4,025,935 | + | -0.3 | |||
4,026,012 | + | HEPCGN_26385 | 0.15 | -1.5 | |
4,026,380 | + | HEPCGN_26385 | 0.45 | +0.2 | |
4,026,472 | - | HEPCGN_26385 | 0.52 | +0.2 | |
4,026,781 | - | HEPCGN_26385 | 0.76 | -1.9 | |
4,026,949 | - | HEPCGN_26385 | 0.90 | -0.3 | |
4,027,156 | - | -0.4 | |||
4,027,203 | + | -0.4 | |||
4,027,257 | + | -1.6 | |||
4,027,377 | + | ompC2 | HEPCGN_26390 | 0.12 | -0.6 |
4,027,399 | - | ompC2 | HEPCGN_26390 | 0.14 | -0.4 |
4,027,399 | - | ompC2 | HEPCGN_26390 | 0.14 | +0.6 |
4,027,503 | - | ompC2 | HEPCGN_26390 | 0.23 | +0.8 |
4,027,545 | + | ompC2 | HEPCGN_26390 | 0.27 | +0.2 |
4,027,572 | + | ompC2 | HEPCGN_26390 | 0.30 | +0.5 |
4,027,587 | + | ompC2 | HEPCGN_26390 | 0.31 | -1.1 |
4,027,618 | + | ompC2 | HEPCGN_26390 | 0.34 | +0.4 |
4,027,703 | - | ompC2 | HEPCGN_26390 | 0.41 | +0.8 |
4,027,737 | + | ompC2 | HEPCGN_26390 | 0.45 | +1.1 |
4,027,738 | - | ompC2 | HEPCGN_26390 | 0.45 | +0.3 |
4,027,831 | - | ompC2 | HEPCGN_26390 | 0.53 | -0.2 |
4,027,885 | - | ompC2 | HEPCGN_26390 | 0.58 | +0.5 |
4,027,909 | - | ompC2 | HEPCGN_26390 | 0.60 | +0.4 |
4,028,003 | - | ompC2 | HEPCGN_26390 | 0.69 | -0.2 |
Or see this region's nucleotide sequence