Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tra5 and HEPCGN_10980 overlap by 17 nucleotides HEPCGN_10980 and HEPCGN_10985 are separated by 238 nucleotides HEPCGN_10985 and HEPCGN_10990 are separated by 271 nucleotides
HEPCGN_10975: tra5 - IS3 family transposase, at 937,130 to 937,576
tra5
HEPCGN_10980: HEPCGN_10980 - Transposase, at 937,560 to 937,778
_10980
HEPCGN_10985: HEPCGN_10985 - Insertion element IS629 uncharacterized protein, at 938,017 to 938,343
_10985
HEPCGN_10990: HEPCGN_10990 - IS256 family transposase, at 938,615 to 939,385
_10990
Position (kb) 938
939 Strain fitness (log2 ratio) -2
-1
0
1 at 937.019 kb on - strand at 937.019 kb on - strand at 937.423 kb on - strand, within tra5 at 937.543 kb on + strand at 937.556 kb on + strand at 937.580 kb on - strand at 937.580 kb on - strand at 937.826 kb on - strand at 937.846 kb on - strand at 937.848 kb on - strand at 937.848 kb on - strand at 937.856 kb on + strand at 937.857 kb on - strand at 937.857 kb on - strand at 938.184 kb on - strand, within HEPCGN_10985 at 938.443 kb on - strand at 938.546 kb on - strand at 938.784 kb on + strand, within HEPCGN_10990 at 938.820 kb on - strand, within HEPCGN_10990 at 938.892 kb on - strand, within HEPCGN_10990 at 938.898 kb on + strand, within HEPCGN_10990 at 938.943 kb on - strand, within HEPCGN_10990 at 938.965 kb on + strand, within HEPCGN_10990 at 938.985 kb on + strand, within HEPCGN_10990 at 939.114 kb on + strand, within HEPCGN_10990 at 939.115 kb on - strand, within HEPCGN_10990 at 939.115 kb on - strand, within HEPCGN_10990 at 939.131 kb on + strand, within HEPCGN_10990 at 939.131 kb on + strand, within HEPCGN_10990 at 939.132 kb on - strand, within HEPCGN_10990 at 939.132 kb on - strand, within HEPCGN_10990 at 939.152 kb on - strand, within HEPCGN_10990 at 939.152 kb on - strand, within HEPCGN_10990 at 939.183 kb on - strand, within HEPCGN_10990 at 939.240 kb on - strand, within HEPCGN_10990 at 939.290 kb on + strand, within HEPCGN_10990 at 939.327 kb on - strand at 939.343 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 937,019 - -0.3 937,019 - +0.2 937,423 - tra5 HEPCGN_10975 0.66 -1.5 937,543 + +0.1 937,556 + +0.2 937,580 - +0.1 937,580 - +0.3 937,826 - +0.2 937,846 - -1.0 937,848 - -0.8 937,848 - +1.7 937,856 + -0.4 937,857 - -0.1 937,857 - +1.7 938,184 - HEPCGN_10985 0.51 -0.6 938,443 - +0.2 938,546 - -1.3 938,784 + HEPCGN_10990 0.22 +0.2 938,820 - HEPCGN_10990 0.27 +0.5 938,892 - HEPCGN_10990 0.36 +0.0 938,898 + HEPCGN_10990 0.37 -0.3 938,943 - HEPCGN_10990 0.43 +0.1 938,965 + HEPCGN_10990 0.45 +0.1 938,985 + HEPCGN_10990 0.48 -0.2 939,114 + HEPCGN_10990 0.65 -1.0 939,115 - HEPCGN_10990 0.65 -0.4 939,115 - HEPCGN_10990 0.65 +0.4 939,131 + HEPCGN_10990 0.67 -0.9 939,131 + HEPCGN_10990 0.67 +1.1 939,132 - HEPCGN_10990 0.67 -0.3 939,132 - HEPCGN_10990 0.67 -0.3 939,152 - HEPCGN_10990 0.70 +0.4 939,152 - HEPCGN_10990 0.70 -0.1 939,183 - HEPCGN_10990 0.74 +0.2 939,240 - HEPCGN_10990 0.81 +0.4 939,290 + HEPCGN_10990 0.88 -0.7 939,327 - -0.2 939,343 - -2.1
Or see this region's nucleotide sequence