Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_09405 and HEPCGN_09410 are separated by 63 nucleotides HEPCGN_09410 and HEPCGN_09415 are separated by 107 nucleotides HEPCGN_09415 and tsr are separated by 42 nucleotides
HEPCGN_09405: HEPCGN_09405 - C4-dicarboxylate ABC transporter, at 620,402 to 621,373
_09405
HEPCGN_09410: HEPCGN_09410 - C4-dicarboxylate ABC transporter permease, at 621,437 to 621,799
_09410
HEPCGN_09415: HEPCGN_09415 - C4-dicarboxylate ABC transporter, at 621,907 to 623,178
_09415
HEPCGN_09420: tsr - methyl-accepting chemotaxis protein, at 623,221 to 624,882
tsr
Position (kb) 621
622
623
624 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 620.911 kb on + strand, within HEPCGN_09405 at 620.928 kb on + strand, within HEPCGN_09405 at 621.019 kb on - strand, within HEPCGN_09405 at 621.072 kb on - strand, within HEPCGN_09405 at 621.090 kb on - strand, within HEPCGN_09405 at 621.101 kb on - strand, within HEPCGN_09405 at 621.101 kb on - strand, within HEPCGN_09405 at 621.114 kb on + strand, within HEPCGN_09405 at 621.115 kb on - strand, within HEPCGN_09405 at 621.115 kb on - strand, within HEPCGN_09405 at 621.195 kb on - strand, within HEPCGN_09405 at 621.371 kb on + strand at 621.371 kb on + strand at 621.371 kb on + strand at 621.423 kb on + strand at 621.516 kb on + strand, within HEPCGN_09410 at 621.527 kb on + strand, within HEPCGN_09410 at 621.528 kb on - strand, within HEPCGN_09410 at 621.725 kb on + strand, within HEPCGN_09410 at 621.725 kb on + strand, within HEPCGN_09410 at 621.726 kb on - strand, within HEPCGN_09410 at 621.726 kb on - strand, within HEPCGN_09410 at 621.848 kb on + strand at 621.848 kb on + strand at 621.849 kb on - strand at 621.857 kb on + strand at 621.864 kb on + strand at 621.874 kb on + strand at 621.918 kb on - strand at 622.005 kb on - strand at 622.093 kb on - strand, within HEPCGN_09415 at 622.109 kb on + strand, within HEPCGN_09415 at 622.110 kb on - strand, within HEPCGN_09415 at 622.110 kb on - strand, within HEPCGN_09415 at 622.291 kb on - strand, within HEPCGN_09415 at 622.291 kb on - strand, within HEPCGN_09415 at 622.367 kb on + strand, within HEPCGN_09415 at 622.377 kb on + strand, within HEPCGN_09415 at 622.446 kb on - strand, within HEPCGN_09415 at 622.501 kb on - strand, within HEPCGN_09415 at 622.524 kb on + strand, within HEPCGN_09415 at 622.679 kb on - strand, within HEPCGN_09415 at 622.755 kb on - strand, within HEPCGN_09415 at 622.940 kb on + strand, within HEPCGN_09415 at 622.941 kb on - strand, within HEPCGN_09415 at 623.037 kb on + strand, within HEPCGN_09415 at 623.055 kb on - strand at 623.055 kb on - strand at 623.058 kb on + strand at 623.058 kb on + strand at 623.058 kb on + strand at 623.058 kb on + strand at 623.059 kb on - strand at 623.059 kb on - strand at 623.059 kb on - strand at 623.061 kb on + strand at 623.120 kb on + strand at 623.126 kb on + strand at 623.146 kb on + strand at 623.146 kb on + strand at 623.146 kb on + strand at 623.146 kb on + strand at 623.146 kb on + strand at 623.147 kb on - strand at 623.147 kb on - strand at 623.147 kb on - strand at 623.147 kb on - strand at 623.147 kb on - strand at 623.148 kb on + strand at 623.148 kb on + strand at 623.148 kb on + strand at 623.149 kb on - strand at 623.176 kb on + strand at 623.176 kb on + strand at 623.177 kb on - strand at 623.180 kb on - strand at 623.180 kb on - strand at 623.183 kb on - strand at 623.217 kb on + strand at 623.217 kb on + strand at 623.248 kb on - strand at 623.274 kb on + strand at 623.274 kb on + strand at 623.631 kb on + strand, within tsr at 623.755 kb on - strand, within tsr at 623.890 kb on + strand, within tsr at 624.050 kb on + strand, within tsr at 624.050 kb on + strand, within tsr at 624.050 kb on + strand, within tsr at 624.051 kb on - strand, within tsr at 624.051 kb on - strand, within tsr at 624.051 kb on - strand, within tsr at 624.087 kb on + strand, within tsr at 624.109 kb on - strand, within tsr
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 620,911 + HEPCGN_09405 0.52 -0.1 620,928 + HEPCGN_09405 0.54 +0.6 621,019 - HEPCGN_09405 0.63 +0.4 621,072 - HEPCGN_09405 0.69 +0.5 621,090 - HEPCGN_09405 0.71 -0.3 621,101 - HEPCGN_09405 0.72 +0.1 621,101 - HEPCGN_09405 0.72 -0.3 621,114 + HEPCGN_09405 0.73 -0.4 621,115 - HEPCGN_09405 0.73 +0.8 621,115 - HEPCGN_09405 0.73 -1.0 621,195 - HEPCGN_09405 0.82 -0.8 621,371 + +0.1 621,371 + +0.6 621,371 + -0.4 621,423 + +0.3 621,516 + HEPCGN_09410 0.22 -0.4 621,527 + HEPCGN_09410 0.25 +2.9 621,528 - HEPCGN_09410 0.25 +0.4 621,725 + HEPCGN_09410 0.79 +0.5 621,725 + HEPCGN_09410 0.79 +0.5 621,726 - HEPCGN_09410 0.80 -0.2 621,726 - HEPCGN_09410 0.80 -0.4 621,848 + -0.0 621,848 + +0.1 621,849 - -0.9 621,857 + -0.2 621,864 + +0.3 621,874 + -0.1 621,918 - +0.7 622,005 - +0.2 622,093 - HEPCGN_09415 0.15 +0.2 622,109 + HEPCGN_09415 0.16 +2.1 622,110 - HEPCGN_09415 0.16 +0.4 622,110 - HEPCGN_09415 0.16 -0.2 622,291 - HEPCGN_09415 0.30 +0.0 622,291 - HEPCGN_09415 0.30 +0.1 622,367 + HEPCGN_09415 0.36 +0.8 622,377 + HEPCGN_09415 0.37 +0.4 622,446 - HEPCGN_09415 0.42 -0.3 622,501 - HEPCGN_09415 0.47 +0.1 622,524 + HEPCGN_09415 0.49 +0.1 622,679 - HEPCGN_09415 0.61 +0.3 622,755 - HEPCGN_09415 0.67 +0.5 622,940 + HEPCGN_09415 0.81 +0.1 622,941 - HEPCGN_09415 0.81 +0.0 623,037 + HEPCGN_09415 0.89 -1.4 623,055 - -1.5 623,055 - +0.4 623,058 + +1.1 623,058 + -0.6 623,058 + +0.1 623,058 + -0.0 623,059 - -0.5 623,059 - -0.2 623,059 - -0.5 623,061 + +0.1 623,120 + -0.0 623,126 + -0.9 623,146 + +0.2 623,146 + +0.2 623,146 + -0.5 623,146 + +0.2 623,146 + +0.1 623,147 - -0.9 623,147 - +0.2 623,147 - -2.1 623,147 - -0.8 623,147 - +0.0 623,148 + +0.3 623,148 + -0.1 623,148 + +1.1 623,149 - +0.2 623,176 + -0.4 623,176 + +0.7 623,177 - +0.6 623,180 - -0.5 623,180 - -0.1 623,183 - +0.3 623,217 + +0.3 623,217 + +0.5 623,248 - -0.2 623,274 + -0.2 623,274 + +1.4 623,631 + tsr HEPCGN_09420 0.25 +0.8 623,755 - tsr HEPCGN_09420 0.32 +0.5 623,890 + tsr HEPCGN_09420 0.40 +0.9 624,050 + tsr HEPCGN_09420 0.50 -1.6 624,050 + tsr HEPCGN_09420 0.50 +0.1 624,050 + tsr HEPCGN_09420 0.50 +0.0 624,051 - tsr HEPCGN_09420 0.50 -2.3 624,051 - tsr HEPCGN_09420 0.50 -0.7 624,051 - tsr HEPCGN_09420 0.50 +0.6 624,087 + tsr HEPCGN_09420 0.52 -0.8 624,109 - tsr HEPCGN_09420 0.53 +0.6
Or see this region's nucleotide sequence