Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimD and fimD are separated by 108 nucleotides fimD and HEPCGN_09005 are separated by 12 nucleotides HEPCGN_09005 and nhaR are separated by 37 nucleotides
HEPCGN_08995: fimD - fimbrial assembly protein, at 545,643 to 547,610
fimD
HEPCGN_09000: fimD - fimbrial assembly protein, at 547,719 to 548,093
fimD
HEPCGN_09005: HEPCGN_09005 - fimbrial family protein, at 548,106 to 549,065
_09005
HEPCGN_09010: nhaR - transcriptional activator NhaR, at 549,103 to 550,002
nhaR
Position (kb) 548
549
550 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 547.124 kb on - strand, within fimD at 547.434 kb on + strand at 547.510 kb on + strand at 547.592 kb on + strand at 547.757 kb on - strand, within fimD at 547.857 kb on - strand, within fimD at 547.867 kb on - strand, within fimD at 547.869 kb on - strand, within fimD at 547.869 kb on - strand, within fimD at 547.871 kb on - strand, within fimD at 547.900 kb on + strand, within fimD at 547.940 kb on + strand, within fimD at 548.082 kb on - strand at 548.435 kb on - strand, within HEPCGN_09005 at 548.793 kb on + strand, within HEPCGN_09005 at 548.878 kb on + strand, within HEPCGN_09005 at 548.935 kb on - strand, within HEPCGN_09005 at 548.935 kb on - strand, within HEPCGN_09005 at 548.937 kb on + strand, within HEPCGN_09005 at 548.980 kb on + strand at 549.057 kb on + strand at 549.057 kb on + strand at 549.058 kb on - strand at 549.063 kb on + strand at 549.064 kb on - strand at 549.082 kb on + strand at 549.083 kb on - strand at 549.134 kb on + strand at 549.135 kb on - strand at 549.141 kb on + strand at 549.201 kb on - strand, within nhaR at 549.201 kb on - strand, within nhaR at 549.264 kb on - strand, within nhaR at 549.269 kb on + strand, within nhaR at 549.270 kb on - strand, within nhaR at 549.356 kb on - strand, within nhaR at 549.541 kb on - strand, within nhaR at 549.589 kb on + strand, within nhaR at 549.589 kb on + strand, within nhaR at 549.589 kb on + strand, within nhaR at 549.590 kb on - strand, within nhaR at 549.652 kb on + strand, within nhaR at 549.667 kb on - strand, within nhaR at 549.667 kb on - strand, within nhaR at 549.670 kb on + strand, within nhaR at 549.671 kb on - strand, within nhaR at 549.691 kb on - strand, within nhaR at 549.743 kb on + strand, within nhaR at 549.744 kb on - strand, within nhaR at 549.795 kb on - strand, within nhaR at 549.917 kb on + strand at 549.957 kb on - strand at 549.972 kb on - strand at 549.987 kb on - strand at 549.987 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 547,124 - fimD HEPCGN_08995 0.75 +0.5 547,434 + -0.9 547,510 + -0.0 547,592 + -0.3 547,757 - fimD HEPCGN_09000 0.10 -0.5 547,857 - fimD HEPCGN_09000 0.37 +0.8 547,867 - fimD HEPCGN_09000 0.39 +2.0 547,869 - fimD HEPCGN_09000 0.40 -0.8 547,869 - fimD HEPCGN_09000 0.40 +0.2 547,871 - fimD HEPCGN_09000 0.41 -0.1 547,900 + fimD HEPCGN_09000 0.48 -1.1 547,940 + fimD HEPCGN_09000 0.59 -0.4 548,082 - -1.7 548,435 - HEPCGN_09005 0.34 -0.3 548,793 + HEPCGN_09005 0.72 +0.1 548,878 + HEPCGN_09005 0.80 -1.8 548,935 - HEPCGN_09005 0.86 -3.0 548,935 - HEPCGN_09005 0.86 -1.9 548,937 + HEPCGN_09005 0.87 -0.1 548,980 + -0.1 549,057 + +0.2 549,057 + +1.1 549,058 - +1.3 549,063 + +1.1 549,064 - +0.3 549,082 + -0.2 549,083 - -0.2 549,134 + +1.1 549,135 - +0.1 549,141 + +0.4 549,201 - nhaR HEPCGN_09010 0.11 +1.3 549,201 - nhaR HEPCGN_09010 0.11 +0.2 549,264 - nhaR HEPCGN_09010 0.18 -0.6 549,269 + nhaR HEPCGN_09010 0.18 -0.2 549,270 - nhaR HEPCGN_09010 0.19 +0.1 549,356 - nhaR HEPCGN_09010 0.28 +0.6 549,541 - nhaR HEPCGN_09010 0.49 -0.8 549,589 + nhaR HEPCGN_09010 0.54 +0.0 549,589 + nhaR HEPCGN_09010 0.54 -0.2 549,589 + nhaR HEPCGN_09010 0.54 +0.1 549,590 - nhaR HEPCGN_09010 0.54 +0.9 549,652 + nhaR HEPCGN_09010 0.61 +0.0 549,667 - nhaR HEPCGN_09010 0.63 -0.2 549,667 - nhaR HEPCGN_09010 0.63 -0.3 549,670 + nhaR HEPCGN_09010 0.63 +1.0 549,671 - nhaR HEPCGN_09010 0.63 -0.5 549,691 - nhaR HEPCGN_09010 0.65 -0.1 549,743 + nhaR HEPCGN_09010 0.71 +0.5 549,744 - nhaR HEPCGN_09010 0.71 -0.3 549,795 - nhaR HEPCGN_09010 0.77 +1.1 549,917 + -0.7 549,957 - -0.2 549,972 - -0.6 549,987 - -0.2 549,987 - +0.3
Or see this region's nucleotide sequence