Strain Fitness in Escherichia coli ECOR38 around HEPCGN_08675

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcra and fruL are separated by 81 nucleotidesfruL and ilvN are separated by 11 nucleotidesilvN and ilvI are separated by 2 nucleotides HEPCGN_08665: cra - catabolite repressor/activator, at 473,364 to 474,368 cra HEPCGN_08670: fruL - Putative fruR/shl operon leader peptide, at 474,450 to 474,536 fruL HEPCGN_08675: ilvN - acetolactate synthase small subunit, at 474,548 to 475,039 ilvN HEPCGN_08680: ilvI - acetolactate synthase 3 large subunit, at 475,042 to 476,766 ilvI Position (kb) 474 475 476Strain fitness (log2 ratio) -2 -1 0 1 2at 473.596 kb on - strand, within craat 473.686 kb on - strand, within craat 473.818 kb on + strand, within craat 473.818 kb on + strand, within craat 473.844 kb on - strand, within craat 473.847 kb on + strand, within craat 474.124 kb on + strand, within craat 474.124 kb on + strand, within craat 474.125 kb on - strand, within craat 474.125 kb on - strand, within craat 474.129 kb on - strand, within craat 474.143 kb on - strand, within craat 474.179 kb on + strand, within craat 474.229 kb on + strand, within craat 474.230 kb on - strand, within craat 474.313 kb on + strandat 474.314 kb on - strandat 474.314 kb on - strandat 474.314 kb on - strandat 474.314 kb on - strandat 474.314 kb on - strandat 474.384 kb on - strandat 474.661 kb on + strand, within ilvNat 474.661 kb on + strand, within ilvNat 474.682 kb on - strand, within ilvNat 475.026 kb on - strandat 475.026 kb on - strandat 475.029 kb on - strandat 475.039 kb on + strandat 475.039 kb on + strandat 475.106 kb on + strandat 475.155 kb on + strandat 475.275 kb on + strand, within ilvIat 475.277 kb on + strand, within ilvIat 475.277 kb on + strand, within ilvIat 475.277 kb on + strand, within ilvIat 475.277 kb on + strand, within ilvIat 475.277 kb on + strand, within ilvIat 475.278 kb on - strand, within ilvIat 475.278 kb on - strand, within ilvIat 475.278 kb on - strand, within ilvIat 475.278 kb on - strand, within ilvIat 475.301 kb on + strand, within ilvIat 475.301 kb on + strand, within ilvIat 475.389 kb on + strand, within ilvIat 475.551 kb on - strand, within ilvIat 475.553 kb on + strand, within ilvIat 475.553 kb on + strand, within ilvIat 475.553 kb on + strand, within ilvIat 475.976 kb on + strand, within ilvIat 475.977 kb on - strand, within ilvIat 475.977 kb on - strand, within ilvI

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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473,596 - cra HEPCGN_08665 0.23 -1.6
473,686 - cra HEPCGN_08665 0.32 +1.1
473,818 + cra HEPCGN_08665 0.45 -1.6
473,818 + cra HEPCGN_08665 0.45 -0.5
473,844 - cra HEPCGN_08665 0.48 -1.2
473,847 + cra HEPCGN_08665 0.48 +1.5
474,124 + cra HEPCGN_08665 0.76 -0.4
474,124 + cra HEPCGN_08665 0.76 -1.8
474,125 - cra HEPCGN_08665 0.76 +0.1
474,125 - cra HEPCGN_08665 0.76 -1.0
474,129 - cra HEPCGN_08665 0.76 -1.0
474,143 - cra HEPCGN_08665 0.78 -1.8
474,179 + cra HEPCGN_08665 0.81 -0.1
474,229 + cra HEPCGN_08665 0.86 -0.4
474,230 - cra HEPCGN_08665 0.86 +0.3
474,313 + -0.7
474,314 - -2.2
474,314 - -1.0
474,314 - -0.7
474,314 - +0.5
474,314 - +1.9
474,384 - +0.6
474,661 + ilvN HEPCGN_08675 0.23 +0.1
474,661 + ilvN HEPCGN_08675 0.23 +0.3
474,682 - ilvN HEPCGN_08675 0.27 +0.5
475,026 - -0.5
475,026 - -0.5
475,029 - -0.5
475,039 + +0.5
475,039 + -0.2
475,106 + +0.8
475,155 + -0.4
475,275 + ilvI HEPCGN_08680 0.14 +0.0
475,277 + ilvI HEPCGN_08680 0.14 +0.3
475,277 + ilvI HEPCGN_08680 0.14 +0.1
475,277 + ilvI HEPCGN_08680 0.14 +0.1
475,277 + ilvI HEPCGN_08680 0.14 +0.0
475,277 + ilvI HEPCGN_08680 0.14 -1.0
475,278 - ilvI HEPCGN_08680 0.14 +0.4
475,278 - ilvI HEPCGN_08680 0.14 -0.5
475,278 - ilvI HEPCGN_08680 0.14 +0.2
475,278 - ilvI HEPCGN_08680 0.14 +0.3
475,301 + ilvI HEPCGN_08680 0.15 +0.4
475,301 + ilvI HEPCGN_08680 0.15 +0.2
475,389 + ilvI HEPCGN_08680 0.20 +0.4
475,551 - ilvI HEPCGN_08680 0.30 -0.1
475,553 + ilvI HEPCGN_08680 0.30 -0.5
475,553 + ilvI HEPCGN_08680 0.30 -0.3
475,553 + ilvI HEPCGN_08680 0.30 +0.0
475,976 + ilvI HEPCGN_08680 0.54 -0.2
475,977 - ilvI HEPCGN_08680 0.54 -0.2
475,977 - ilvI HEPCGN_08680 0.54 +0.4

Or see this region's nucleotide sequence