Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt coaE and zapD overlap by 1 nucleotides zapD and yacG are separated by 9 nucleotides yacG and mutT are separated by 87 nucleotides mutT and secA are separated by 59 nucleotides
HEPCGN_08540: coaE - dephospho-CoA kinase, at 449,295 to 449,915
coaE
HEPCGN_08545: zapD - cell division protein ZapD, at 449,915 to 450,658
zapD
HEPCGN_08550: yacG - DNA gyrase inhibitor YacG, at 450,668 to 450,865
yacG
HEPCGN_08560: mutT - 8-oxo-dGTP diphosphatase MutT, at 450,953 to 451,351
mutT
HEPCGN_08570: secA - preprotein translocase subunit SecA, at 451,411 to 454,116
secA
Position (kb) 450
451 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 449.946 kb on + strand at 449.962 kb on + strand at 449.962 kb on + strand at 450.010 kb on - strand, within zapD at 450.131 kb on - strand, within zapD at 450.131 kb on - strand, within zapD at 450.321 kb on + strand, within zapD at 450.322 kb on - strand, within zapD at 450.348 kb on + strand, within zapD at 450.418 kb on + strand, within zapD at 450.418 kb on + strand, within zapD at 450.418 kb on + strand, within zapD at 450.419 kb on - strand, within zapD at 450.435 kb on + strand, within zapD at 450.436 kb on - strand, within zapD at 450.569 kb on - strand, within zapD at 450.569 kb on - strand, within zapD at 450.569 kb on - strand, within zapD at 450.680 kb on - strand at 450.680 kb on - strand at 450.772 kb on - strand, within yacG at 450.871 kb on + strand at 450.872 kb on - strand at 450.924 kb on + strand at 450.924 kb on + strand at 450.925 kb on - strand at 450.963 kb on + strand at 450.963 kb on + strand at 450.964 kb on - strand at 450.964 kb on - strand at 450.973 kb on + strand at 450.973 kb on + strand at 450.974 kb on - strand at 451.112 kb on + strand, within mutT at 451.112 kb on + strand, within mutT at 451.113 kb on - strand, within mutT at 451.113 kb on - strand, within mutT at 451.113 kb on - strand, within mutT at 451.113 kb on - strand, within mutT at 451.113 kb on - strand, within mutT at 451.114 kb on + strand, within mutT at 451.114 kb on + strand, within mutT at 451.114 kb on + strand, within mutT at 451.114 kb on + strand, within mutT at 451.115 kb on - strand, within mutT at 451.115 kb on - strand, within mutT at 451.135 kb on - strand, within mutT at 451.292 kb on + strand, within mutT at 451.294 kb on + strand, within mutT at 451.295 kb on - strand, within mutT at 451.324 kb on + strand at 451.324 kb on + strand at 451.357 kb on + strand at 451.357 kb on + strand at 451.358 kb on - strand at 451.393 kb on + strand at 451.413 kb on - strand at 451.413 kb on - strand at 451.620 kb on + strand at 451.620 kb on + strand at 451.620 kb on + strand at 451.621 kb on - strand at 451.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 449,946 + +0.3 449,962 + -0.3 449,962 + -0.6 450,010 - zapD HEPCGN_08545 0.13 +1.5 450,131 - zapD HEPCGN_08545 0.29 -0.5 450,131 - zapD HEPCGN_08545 0.29 -1.1 450,321 + zapD HEPCGN_08545 0.55 +2.7 450,322 - zapD HEPCGN_08545 0.55 -1.3 450,348 + zapD HEPCGN_08545 0.58 -1.6 450,418 + zapD HEPCGN_08545 0.68 -1.0 450,418 + zapD HEPCGN_08545 0.68 -0.6 450,418 + zapD HEPCGN_08545 0.68 -1.1 450,419 - zapD HEPCGN_08545 0.68 +0.5 450,435 + zapD HEPCGN_08545 0.70 -0.6 450,436 - zapD HEPCGN_08545 0.70 -0.1 450,569 - zapD HEPCGN_08545 0.88 -3.0 450,569 - zapD HEPCGN_08545 0.88 -0.1 450,569 - zapD HEPCGN_08545 0.88 +0.4 450,680 - -1.2 450,680 - +0.1 450,772 - yacG HEPCGN_08550 0.53 -0.6 450,871 + -0.6 450,872 - -0.0 450,924 + +0.2 450,924 + +0.0 450,925 - -0.6 450,963 + +0.1 450,963 + -0.4 450,964 - -0.1 450,964 - +0.3 450,973 + +0.5 450,973 + -0.0 450,974 - +0.8 451,112 + mutT HEPCGN_08560 0.40 +0.3 451,112 + mutT HEPCGN_08560 0.40 +0.1 451,113 - mutT HEPCGN_08560 0.40 +0.2 451,113 - mutT HEPCGN_08560 0.40 +0.2 451,113 - mutT HEPCGN_08560 0.40 +0.8 451,113 - mutT HEPCGN_08560 0.40 -0.3 451,113 - mutT HEPCGN_08560 0.40 +0.8 451,114 + mutT HEPCGN_08560 0.40 -0.4 451,114 + mutT HEPCGN_08560 0.40 -0.1 451,114 + mutT HEPCGN_08560 0.40 -0.3 451,114 + mutT HEPCGN_08560 0.40 -0.8 451,115 - mutT HEPCGN_08560 0.41 +0.5 451,115 - mutT HEPCGN_08560 0.41 +2.5 451,135 - mutT HEPCGN_08560 0.46 +0.4 451,292 + mutT HEPCGN_08560 0.85 -0.4 451,294 + mutT HEPCGN_08560 0.85 +0.3 451,295 - mutT HEPCGN_08560 0.86 +0.3 451,324 + -0.9 451,324 + -0.0 451,357 + +0.0 451,357 + +0.2 451,358 - -0.5 451,393 + -0.1 451,413 - -0.3 451,413 - -1.1 451,620 + +0.9 451,620 + -3.0 451,620 + -2.5 451,621 - +0.3 451,621 - +1.1
Or see this region's nucleotide sequence