Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt araH and araH overlap by 4 nucleotides araH and ccmA overlap by 8 nucleotides ccmA and rbsB are separated by 48 nucleotides
HEPCGN_07520: araH - sugar ABC transporter permease, at 242,492 to 243,448
araH
HEPCGN_07525: araH - sugar ABC transporter permease, at 243,445 to 244,416
araH
HEPCGN_07530: ccmA - heme ABC exporter ATP-binding protein CcmA, at 244,409 to 245,893
ccmA
HEPCGN_07535: rbsB - LacI family transcriptional regulator, at 245,942 to 246,928
rbsB
Position (kb) 244
245
246 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 243.427 kb on + strand at 243.633 kb on + strand, within araH at 243.633 kb on + strand, within araH at 243.724 kb on + strand, within araH at 243.725 kb on - strand, within araH at 243.762 kb on - strand, within araH at 243.848 kb on - strand, within araH at 243.891 kb on + strand, within araH at 243.924 kb on - strand, within araH at 243.961 kb on + strand, within araH at 244.054 kb on - strand, within araH at 244.065 kb on + strand, within araH at 244.065 kb on + strand, within araH at 244.066 kb on - strand, within araH at 244.105 kb on + strand, within araH at 244.105 kb on + strand, within araH at 244.114 kb on + strand, within araH at 244.114 kb on + strand, within araH at 244.227 kb on + strand, within araH at 244.227 kb on + strand, within araH at 244.276 kb on - strand, within araH at 244.289 kb on + strand, within araH at 244.289 kb on + strand, within araH at 244.289 kb on + strand, within araH at 244.289 kb on + strand, within araH at 244.290 kb on - strand, within araH at 244.294 kb on - strand, within araH at 244.580 kb on - strand, within ccmA at 244.587 kb on + strand, within ccmA at 244.590 kb on - strand, within ccmA at 244.680 kb on - strand, within ccmA at 244.834 kb on + strand, within ccmA at 244.852 kb on + strand, within ccmA at 244.900 kb on - strand, within ccmA at 244.933 kb on + strand, within ccmA at 244.934 kb on - strand, within ccmA at 244.934 kb on - strand, within ccmA at 244.934 kb on - strand, within ccmA at 245.080 kb on + strand, within ccmA at 245.081 kb on - strand, within ccmA at 245.110 kb on + strand, within ccmA at 245.167 kb on - strand, within ccmA at 245.358 kb on - strand, within ccmA at 245.509 kb on + strand, within ccmA at 245.510 kb on - strand, within ccmA at 245.637 kb on + strand, within ccmA at 245.812 kb on + strand at 245.812 kb on + strand at 245.943 kb on + strand at 245.978 kb on + strand at 245.978 kb on + strand at 245.979 kb on - strand at 245.981 kb on + strand at 245.981 kb on + strand at 245.982 kb on - strand at 245.982 kb on - strand at 245.982 kb on - strand at 246.013 kb on + strand at 246.013 kb on + strand at 246.014 kb on - strand at 246.017 kb on + strand at 246.106 kb on - strand, within rbsB at 246.131 kb on - strand, within rbsB at 246.131 kb on - strand, within rbsB at 246.158 kb on - strand, within rbsB at 246.196 kb on - strand, within rbsB at 246.377 kb on - strand, within rbsB at 246.422 kb on + strand, within rbsB at 246.423 kb on - strand, within rbsB at 246.448 kb on + strand, within rbsB at 246.508 kb on - strand, within rbsB at 246.508 kb on - strand, within rbsB at 246.554 kb on - strand, within rbsB at 246.655 kb on + strand, within rbsB at 246.656 kb on - strand, within rbsB at 246.659 kb on - strand, within rbsB at 246.659 kb on - strand, within rbsB at 246.763 kb on + strand, within rbsB at 246.809 kb on - strand, within rbsB at 246.821 kb on - strand, within rbsB
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 243,427 + -1.5 243,633 + araH HEPCGN_07525 0.19 +1.2 243,633 + araH HEPCGN_07525 0.19 +0.3 243,724 + araH HEPCGN_07525 0.29 +0.8 243,725 - araH HEPCGN_07525 0.29 +0.1 243,762 - araH HEPCGN_07525 0.33 -0.9 243,848 - araH HEPCGN_07525 0.41 +0.3 243,891 + araH HEPCGN_07525 0.46 -0.1 243,924 - araH HEPCGN_07525 0.49 -0.8 243,961 + araH HEPCGN_07525 0.53 -0.0 244,054 - araH HEPCGN_07525 0.63 +0.5 244,065 + araH HEPCGN_07525 0.64 -1.7 244,065 + araH HEPCGN_07525 0.64 -0.5 244,066 - araH HEPCGN_07525 0.64 +1.5 244,105 + araH HEPCGN_07525 0.68 +0.1 244,105 + araH HEPCGN_07525 0.68 -0.3 244,114 + araH HEPCGN_07525 0.69 -1.2 244,114 + araH HEPCGN_07525 0.69 -1.8 244,227 + araH HEPCGN_07525 0.80 +0.2 244,227 + araH HEPCGN_07525 0.80 -0.3 244,276 - araH HEPCGN_07525 0.85 -0.3 244,289 + araH HEPCGN_07525 0.87 +0.3 244,289 + araH HEPCGN_07525 0.87 +0.4 244,289 + araH HEPCGN_07525 0.87 -0.3 244,289 + araH HEPCGN_07525 0.87 -1.2 244,290 - araH HEPCGN_07525 0.87 +0.6 244,294 - araH HEPCGN_07525 0.87 +0.4 244,580 - ccmA HEPCGN_07530 0.12 +3.5 244,587 + ccmA HEPCGN_07530 0.12 +0.5 244,590 - ccmA HEPCGN_07530 0.12 -0.4 244,680 - ccmA HEPCGN_07530 0.18 -1.2 244,834 + ccmA HEPCGN_07530 0.29 +0.9 244,852 + ccmA HEPCGN_07530 0.30 +0.3 244,900 - ccmA HEPCGN_07530 0.33 -1.0 244,933 + ccmA HEPCGN_07530 0.35 -0.1 244,934 - ccmA HEPCGN_07530 0.35 +0.4 244,934 - ccmA HEPCGN_07530 0.35 -0.7 244,934 - ccmA HEPCGN_07530 0.35 +0.3 245,080 + ccmA HEPCGN_07530 0.45 -0.2 245,081 - ccmA HEPCGN_07530 0.45 +0.3 245,110 + ccmA HEPCGN_07530 0.47 -0.1 245,167 - ccmA HEPCGN_07530 0.51 +0.5 245,358 - ccmA HEPCGN_07530 0.64 +1.8 245,509 + ccmA HEPCGN_07530 0.74 +0.1 245,510 - ccmA HEPCGN_07530 0.74 +1.0 245,637 + ccmA HEPCGN_07530 0.83 -0.2 245,812 + -1.4 245,812 + -0.1 245,943 + +0.2 245,978 + +0.3 245,978 + -0.9 245,979 - -1.6 245,981 + +0.0 245,981 + +2.8 245,982 - -0.6 245,982 - +0.0 245,982 - -0.2 246,013 + -1.7 246,013 + +0.8 246,014 - -0.1 246,017 + -0.5 246,106 - rbsB HEPCGN_07535 0.17 +0.1 246,131 - rbsB HEPCGN_07535 0.19 -1.8 246,131 - rbsB HEPCGN_07535 0.19 +0.5 246,158 - rbsB HEPCGN_07535 0.22 -0.4 246,196 - rbsB HEPCGN_07535 0.26 +0.1 246,377 - rbsB HEPCGN_07535 0.44 -0.2 246,422 + rbsB HEPCGN_07535 0.49 +0.3 246,423 - rbsB HEPCGN_07535 0.49 +1.1 246,448 + rbsB HEPCGN_07535 0.51 +0.3 246,508 - rbsB HEPCGN_07535 0.57 +0.5 246,508 - rbsB HEPCGN_07535 0.57 -0.1 246,554 - rbsB HEPCGN_07535 0.62 +2.6 246,655 + rbsB HEPCGN_07535 0.72 +0.0 246,656 - rbsB HEPCGN_07535 0.72 +0.1 246,659 - rbsB HEPCGN_07535 0.73 +0.7 246,659 - rbsB HEPCGN_07535 0.73 -0.3 246,763 + rbsB HEPCGN_07535 0.83 -0.6 246,809 - rbsB HEPCGN_07535 0.88 -0.1 246,821 - rbsB HEPCGN_07535 0.89 +0.4
Or see this region's nucleotide sequence