Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cynX and cynS are separated by 5 nucleotides cynS and cynT are separated by 30 nucleotides cynT and cynR are separated by 109 nucleotides
HEPCGN_07440: cynX - cyanate transporter CynX, at 224,718 to 225,899
cynX
HEPCGN_07445: cynS - cyanase, at 225,905 to 226,375
cynS
HEPCGN_07450: cynT - carbonic anhydrase CynT, at 226,406 to 227,065
cynT
HEPCGN_07455: cynR - transcriptional regulator CynR, at 227,175 to 228,074
cynR
Position (kb) 226
227
228 Strain fitness (log2 ratio) -1
0
1
2 at 225.426 kb on - strand, within cynX at 225.596 kb on + strand, within cynX at 225.654 kb on + strand, within cynX at 225.842 kb on + strand at 225.894 kb on - strand at 225.894 kb on - strand at 225.927 kb on + strand at 225.931 kb on + strand at 225.931 kb on + strand at 225.938 kb on + strand at 225.938 kb on + strand at 225.938 kb on + strand at 225.938 kb on + strand at 225.939 kb on - strand at 225.986 kb on - strand, within cynS at 226.003 kb on + strand, within cynS at 226.016 kb on - strand, within cynS at 226.065 kb on + strand, within cynS at 226.066 kb on - strand, within cynS at 226.083 kb on + strand, within cynS at 226.084 kb on - strand, within cynS at 226.157 kb on + strand, within cynS at 226.157 kb on + strand, within cynS at 226.158 kb on - strand, within cynS at 226.349 kb on - strand at 226.591 kb on + strand, within cynT at 226.720 kb on + strand, within cynT at 226.721 kb on - strand, within cynT at 226.957 kb on + strand, within cynT at 226.997 kb on - strand, within cynT at 227.189 kb on + strand at 227.189 kb on + strand at 227.189 kb on + strand at 227.189 kb on + strand at 227.190 kb on - strand at 227.190 kb on - strand at 227.290 kb on + strand, within cynR at 227.303 kb on - strand, within cynR at 227.373 kb on + strand, within cynR at 227.478 kb on - strand, within cynR at 227.669 kb on - strand, within cynR at 227.675 kb on - strand, within cynR at 227.794 kb on - strand, within cynR at 227.813 kb on - strand, within cynR at 227.991 kb on - strand at 228.023 kb on - strand at 228.039 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 225,426 - cynX HEPCGN_07440 0.60 +0.2 225,596 + cynX HEPCGN_07440 0.74 -0.0 225,654 + cynX HEPCGN_07440 0.79 +0.6 225,842 + -0.0 225,894 - +0.1 225,894 - +0.1 225,927 + -0.3 225,931 + -0.3 225,931 + +0.2 225,938 + +0.6 225,938 + +0.8 225,938 + +1.6 225,938 + -0.4 225,939 - -0.9 225,986 - cynS HEPCGN_07445 0.17 +0.5 226,003 + cynS HEPCGN_07445 0.21 +0.7 226,016 - cynS HEPCGN_07445 0.24 +0.4 226,065 + cynS HEPCGN_07445 0.34 -0.0 226,066 - cynS HEPCGN_07445 0.34 +0.0 226,083 + cynS HEPCGN_07445 0.38 +0.2 226,084 - cynS HEPCGN_07445 0.38 -0.7 226,157 + cynS HEPCGN_07445 0.54 -0.9 226,157 + cynS HEPCGN_07445 0.54 +0.6 226,158 - cynS HEPCGN_07445 0.54 -1.7 226,349 - +0.2 226,591 + cynT HEPCGN_07450 0.28 +0.1 226,720 + cynT HEPCGN_07450 0.48 +1.6 226,721 - cynT HEPCGN_07450 0.48 -0.2 226,957 + cynT HEPCGN_07450 0.83 +0.3 226,997 - cynT HEPCGN_07450 0.90 -1.5 227,189 + +0.1 227,189 + +0.2 227,189 + +1.8 227,189 + +0.3 227,190 - -0.8 227,190 - -0.2 227,290 + cynR HEPCGN_07455 0.13 +0.3 227,303 - cynR HEPCGN_07455 0.14 +0.2 227,373 + cynR HEPCGN_07455 0.22 +0.0 227,478 - cynR HEPCGN_07455 0.34 -0.5 227,669 - cynR HEPCGN_07455 0.55 -0.2 227,675 - cynR HEPCGN_07455 0.56 -0.8 227,794 - cynR HEPCGN_07455 0.69 -1.2 227,813 - cynR HEPCGN_07455 0.71 +0.5 227,991 - -1.0 228,023 - +0.3 228,039 - -0.8
Or see this region's nucleotide sequence