Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yaiW and sbmA are separated by 12 nucleotides sbmA and HEPCGN_07300 are separated by 204 nucleotides HEPCGN_07300 and ampH are separated by 45 nucleotides
HEPCGN_07290: yaiW - surface-exposed outer membrane lipoprotein YaiW, at 190,175 to 191,269
yaiW
HEPCGN_07295: sbmA - peptide antibiotic transporter SbmA, at 191,282 to 192,502
sbmA
HEPCGN_07300: HEPCGN_07300 - hypothetical protein, at 192,707 to 192,808
_07300
HEPCGN_07305: ampH - D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH, at 192,854 to 194,011
ampH
Position (kb) 191
192
193 Strain fitness (log2 ratio) -2
-1
0
1
2 at 190.586 kb on + strand, within yaiW at 190.599 kb on + strand, within yaiW at 190.626 kb on + strand, within yaiW at 190.627 kb on - strand, within yaiW at 190.630 kb on + strand, within yaiW at 190.708 kb on + strand, within yaiW at 190.708 kb on + strand, within yaiW at 190.843 kb on + strand, within yaiW at 190.976 kb on + strand, within yaiW at 191.005 kb on - strand, within yaiW at 191.203 kb on + strand at 191.250 kb on - strand at 191.270 kb on + strand at 191.271 kb on - strand at 191.271 kb on - strand at 191.283 kb on + strand at 191.301 kb on - strand at 191.355 kb on + strand at 191.356 kb on - strand at 191.356 kb on - strand at 191.359 kb on + strand at 191.393 kb on - strand at 191.461 kb on + strand, within sbmA at 191.526 kb on + strand, within sbmA at 191.527 kb on - strand, within sbmA at 191.550 kb on + strand, within sbmA at 191.551 kb on - strand, within sbmA at 191.551 kb on - strand, within sbmA at 191.551 kb on - strand, within sbmA at 191.554 kb on + strand, within sbmA at 191.554 kb on + strand, within sbmA at 191.554 kb on + strand, within sbmA at 191.554 kb on + strand, within sbmA at 191.555 kb on - strand, within sbmA at 191.556 kb on + strand, within sbmA at 191.662 kb on + strand, within sbmA at 191.954 kb on - strand, within sbmA at 191.982 kb on + strand, within sbmA at 191.983 kb on - strand, within sbmA at 191.983 kb on - strand, within sbmA at 192.019 kb on - strand, within sbmA at 192.157 kb on - strand, within sbmA at 192.157 kb on - strand, within sbmA at 192.168 kb on + strand, within sbmA at 192.233 kb on - strand, within sbmA at 192.239 kb on + strand, within sbmA at 192.270 kb on + strand, within sbmA at 192.313 kb on - strand, within sbmA at 192.313 kb on - strand, within sbmA at 192.316 kb on - strand, within sbmA at 192.316 kb on - strand, within sbmA at 192.316 kb on - strand, within sbmA at 192.316 kb on - strand, within sbmA at 192.430 kb on + strand at 192.497 kb on - strand at 192.497 kb on - strand at 192.503 kb on - strand at 192.531 kb on + strand at 192.675 kb on - strand at 192.675 kb on - strand at 192.753 kb on - strand, within HEPCGN_07300 at 192.760 kb on + strand, within HEPCGN_07300 at 192.766 kb on + strand, within HEPCGN_07300 at 192.766 kb on + strand, within HEPCGN_07300 at 192.767 kb on - strand, within HEPCGN_07300 at 192.806 kb on + strand at 192.807 kb on - strand at 192.807 kb on - strand at 192.807 kb on - strand at 192.807 kb on - strand at 192.807 kb on - strand at 192.811 kb on + strand at 192.825 kb on + strand at 192.862 kb on + strand at 192.863 kb on - strand at 192.952 kb on + strand at 192.976 kb on + strand, within ampH at 193.106 kb on - strand, within ampH at 193.126 kb on - strand, within ampH at 193.176 kb on + strand, within ampH at 193.192 kb on + strand, within ampH at 193.192 kb on + strand, within ampH at 193.193 kb on - strand, within ampH at 193.193 kb on - strand, within ampH at 193.193 kb on - strand, within ampH at 193.197 kb on - strand, within ampH at 193.197 kb on - strand, within ampH at 193.226 kb on + strand, within ampH at 193.460 kb on + strand, within ampH at 193.462 kb on + strand, within ampH at 193.462 kb on + strand, within ampH at 193.463 kb on - strand, within ampH
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 190,586 + yaiW HEPCGN_07290 0.38 -0.2 190,599 + yaiW HEPCGN_07290 0.39 -1.9 190,626 + yaiW HEPCGN_07290 0.41 +0.4 190,627 - yaiW HEPCGN_07290 0.41 +0.5 190,630 + yaiW HEPCGN_07290 0.42 +0.8 190,708 + yaiW HEPCGN_07290 0.49 +2.1 190,708 + yaiW HEPCGN_07290 0.49 +0.1 190,843 + yaiW HEPCGN_07290 0.61 +0.5 190,976 + yaiW HEPCGN_07290 0.73 +0.5 191,005 - yaiW HEPCGN_07290 0.76 -0.2 191,203 + +0.6 191,250 - -0.2 191,270 + +0.8 191,271 - +0.2 191,271 - -0.1 191,283 + -0.5 191,301 - +0.7 191,355 + +0.6 191,356 - +0.6 191,356 - -0.2 191,359 + -0.1 191,393 - -0.6 191,461 + sbmA HEPCGN_07295 0.15 -0.9 191,526 + sbmA HEPCGN_07295 0.20 -0.1 191,527 - sbmA HEPCGN_07295 0.20 +0.5 191,550 + sbmA HEPCGN_07295 0.22 +0.2 191,551 - sbmA HEPCGN_07295 0.22 +0.2 191,551 - sbmA HEPCGN_07295 0.22 -0.0 191,551 - sbmA HEPCGN_07295 0.22 -0.1 191,554 + sbmA HEPCGN_07295 0.22 -1.8 191,554 + sbmA HEPCGN_07295 0.22 -0.6 191,554 + sbmA HEPCGN_07295 0.22 +0.2 191,554 + sbmA HEPCGN_07295 0.22 -0.1 191,555 - sbmA HEPCGN_07295 0.22 -0.7 191,556 + sbmA HEPCGN_07295 0.22 -0.7 191,662 + sbmA HEPCGN_07295 0.31 +0.3 191,954 - sbmA HEPCGN_07295 0.55 +0.5 191,982 + sbmA HEPCGN_07295 0.57 +2.2 191,983 - sbmA HEPCGN_07295 0.57 -1.0 191,983 - sbmA HEPCGN_07295 0.57 +0.2 192,019 - sbmA HEPCGN_07295 0.60 +0.1 192,157 - sbmA HEPCGN_07295 0.72 -0.2 192,157 - sbmA HEPCGN_07295 0.72 -0.2 192,168 + sbmA HEPCGN_07295 0.73 -0.7 192,233 - sbmA HEPCGN_07295 0.78 +0.0 192,239 + sbmA HEPCGN_07295 0.78 -0.4 192,270 + sbmA HEPCGN_07295 0.81 -0.3 192,313 - sbmA HEPCGN_07295 0.84 -0.4 192,313 - sbmA HEPCGN_07295 0.84 +0.9 192,316 - sbmA HEPCGN_07295 0.85 -0.4 192,316 - sbmA HEPCGN_07295 0.85 +0.2 192,316 - sbmA HEPCGN_07295 0.85 -1.2 192,316 - sbmA HEPCGN_07295 0.85 -1.1 192,430 + +0.2 192,497 - -0.2 192,497 - +0.2 192,503 - +1.0 192,531 + +0.9 192,675 - +0.0 192,675 - +0.7 192,753 - HEPCGN_07300 0.45 -0.1 192,760 + HEPCGN_07300 0.52 +0.6 192,766 + HEPCGN_07300 0.58 -0.2 192,766 + HEPCGN_07300 0.58 -0.5 192,767 - HEPCGN_07300 0.59 -0.2 192,806 + +0.0 192,807 - -0.2 192,807 - -0.1 192,807 - -0.2 192,807 - -1.0 192,807 - +1.9 192,811 + -0.1 192,825 + -1.3 192,862 + +0.7 192,863 - +0.8 192,952 + +0.6 192,976 + ampH HEPCGN_07305 0.11 +0.5 193,106 - ampH HEPCGN_07305 0.22 -0.3 193,126 - ampH HEPCGN_07305 0.23 +0.3 193,176 + ampH HEPCGN_07305 0.28 +0.5 193,192 + ampH HEPCGN_07305 0.29 +0.3 193,192 + ampH HEPCGN_07305 0.29 -1.1 193,193 - ampH HEPCGN_07305 0.29 -0.7 193,193 - ampH HEPCGN_07305 0.29 -0.6 193,193 - ampH HEPCGN_07305 0.29 -0.0 193,197 - ampH HEPCGN_07305 0.30 +1.3 193,197 - ampH HEPCGN_07305 0.30 +0.2 193,226 + ampH HEPCGN_07305 0.32 -0.4 193,460 + ampH HEPCGN_07305 0.52 -0.6 193,462 + ampH HEPCGN_07305 0.53 -0.2 193,462 + ampH HEPCGN_07305 0.53 +1.2 193,463 - ampH HEPCGN_07305 0.53 -0.0
Or see this region's nucleotide sequence