Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Arg_trna and fimZ are separated by 241 nucleotides fimZ and sfmF are separated by 2 nucleotides sfmF and fimH are separated by 101 nucleotides
HEPCGN_06410: Arg_trna - tRNA-Arg(tct), at 49 to 125
_trna
HEPCGN_06415: fimZ - fimbria biosynthesis transcriptional regulator FimZ, at 367 to 999
fimZ
HEPCGN_06420: sfmF - fimbria assembly protein, at 1,002 to 1,427
sfmF
HEPCGN_06425: fimH - type 1 fimbria D-mannose specific adhesin FimH, at 1,529 to 2,536
fimH
Position (kb) 0
1 Strain fitness (log2 ratio) -2
-1
0
1 at 0.020 kb on + strand at 0.147 kb on - strand at 0.248 kb on - strand at 0.249 kb on + strand at 0.362 kb on + strand at 0.367 kb on - strand at 0.420 kb on + strand at 0.537 kb on - strand, within fimZ at 0.594 kb on + strand, within fimZ at 0.815 kb on + strand, within fimZ at 1.075 kb on + strand, within sfmF at 1.166 kb on + strand, within sfmF at 1.169 kb on + strand, within sfmF at 1.299 kb on - strand, within sfmF at 1.299 kb on - strand, within sfmF at 1.336 kb on - strand, within sfmF at 1.336 kb on - strand, within sfmF at 1.346 kb on + strand, within sfmF at 1.392 kb on + strand at 1.482 kb on + strand at 1.499 kb on + strand at 1.502 kb on + strand at 1.502 kb on + strand at 1.507 kb on + strand at 1.548 kb on - strand at 1.598 kb on - strand at 1.603 kb on + strand at 1.678 kb on + strand, within fimH at 1.784 kb on + strand, within fimH at 1.784 kb on + strand, within fimH at 1.788 kb on + strand, within fimH at 1.789 kb on - strand, within fimH at 1.880 kb on - strand, within fimH at 1.883 kb on + strand, within fimH
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 20 + +0.2 147 - +0.3 248 - +0.2 249 + -0.3 362 + -0.4 367 - -0.3 420 + +0.4 537 - fimZ HEPCGN_06415 0.27 -0.6 594 + fimZ HEPCGN_06415 0.36 +0.1 815 + fimZ HEPCGN_06415 0.71 -0.5 1,075 + sfmF HEPCGN_06420 0.17 +0.0 1,166 + sfmF HEPCGN_06420 0.38 -0.6 1,169 + sfmF HEPCGN_06420 0.39 +0.4 1,299 - sfmF HEPCGN_06420 0.70 -0.0 1,299 - sfmF HEPCGN_06420 0.70 +0.9 1,336 - sfmF HEPCGN_06420 0.78 -0.1 1,336 - sfmF HEPCGN_06420 0.78 +0.1 1,346 + sfmF HEPCGN_06420 0.81 +0.9 1,392 + +0.4 1,482 + -0.1 1,499 + +0.4 1,502 + +0.0 1,502 + -0.3 1,507 + +0.5 1,548 - +0.9 1,598 - +0.4 1,603 + +0.6 1,678 + fimH HEPCGN_06425 0.15 -0.2 1,784 + fimH HEPCGN_06425 0.25 +0.2 1,784 + fimH HEPCGN_06425 0.25 -2.4 1,788 + fimH HEPCGN_06425 0.26 +0.9 1,789 - fimH HEPCGN_06425 0.26 -0.1 1,880 - fimH HEPCGN_06425 0.35 +0.2 1,883 + fimH HEPCGN_06425 0.35 +1.2
Or see this region's nucleotide sequence