Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pphA and yebW are separated by 0 nucleotides yebW and yebV are separated by 20 nucleotides yebV and rsmF are separated by 117 nucleotides rsmF and yebT are separated by 73 nucleotides
HEPCGN_04825: pphA - protein-serine/threonine phosphatase, at 839,834 to 840,490
pphA
HEPCGN_04830: yebW - Uncharacterized protein YebW, at 840,491 to 840,766
yebW
HEPCGN_04835: yebV - Uncharacterized protein YebV, at 840,787 to 841,023
yebV
HEPCGN_04840: rsmF - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 841,141 to 842,586
rsmF
HEPCGN_04845: yebT - lipid-binding membrane homeostasis protein YebT, at 842,660 to 845,293
yebT
Position (kb) 841
842
843 Strain fitness (log2 ratio) -1
0
1
2 at 840.145 kb on + strand, within pphA at 840.161 kb on + strand, within pphA at 840.162 kb on - strand, within pphA at 840.162 kb on - strand, within pphA at 840.203 kb on + strand, within pphA at 840.203 kb on + strand, within pphA at 840.226 kb on - strand, within pphA at 840.281 kb on + strand, within pphA at 840.281 kb on + strand, within pphA at 840.282 kb on - strand, within pphA at 840.336 kb on + strand, within pphA at 840.365 kb on - strand, within pphA at 840.394 kb on + strand, within pphA at 840.395 kb on - strand, within pphA at 840.395 kb on - strand, within pphA at 840.434 kb on + strand at 840.437 kb on - strand at 840.437 kb on - strand at 840.488 kb on + strand at 840.533 kb on + strand, within yebW at 840.534 kb on - strand, within yebW at 840.586 kb on + strand, within yebW at 840.587 kb on - strand, within yebW at 840.591 kb on + strand, within yebW at 840.655 kb on - strand, within yebW at 840.877 kb on - strand, within yebV at 840.877 kb on - strand, within yebV at 840.909 kb on + strand, within yebV at 840.913 kb on + strand, within yebV at 841.088 kb on + strand at 841.259 kb on - strand at 841.271 kb on - strand at 841.407 kb on + strand, within rsmF at 841.616 kb on + strand, within rsmF at 841.630 kb on + strand, within rsmF at 841.735 kb on - strand, within rsmF at 841.735 kb on - strand, within rsmF at 841.788 kb on - strand, within rsmF at 841.873 kb on + strand, within rsmF at 842.076 kb on + strand, within rsmF at 842.108 kb on - strand, within rsmF at 842.289 kb on - strand, within rsmF at 842.449 kb on - strand at 842.588 kb on + strand at 842.589 kb on - strand at 842.618 kb on + strand at 842.823 kb on - strand at 843.044 kb on - strand, within yebT at 843.076 kb on + strand, within yebT at 843.142 kb on - strand, within yebT at 843.240 kb on + strand, within yebT at 843.241 kb on - strand, within yebT at 843.424 kb on - strand, within yebT at 843.424 kb on - strand, within yebT at 843.430 kb on + strand, within yebT at 843.484 kb on + strand, within yebT at 843.485 kb on - strand, within yebT
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 840,145 + pphA HEPCGN_04825 0.47 -0.2 840,161 + pphA HEPCGN_04825 0.50 +1.1 840,162 - pphA HEPCGN_04825 0.50 -0.9 840,162 - pphA HEPCGN_04825 0.50 -0.4 840,203 + pphA HEPCGN_04825 0.56 -0.7 840,203 + pphA HEPCGN_04825 0.56 -1.3 840,226 - pphA HEPCGN_04825 0.60 -0.7 840,281 + pphA HEPCGN_04825 0.68 -0.7 840,281 + pphA HEPCGN_04825 0.68 +0.7 840,282 - pphA HEPCGN_04825 0.68 -0.1 840,336 + pphA HEPCGN_04825 0.76 +1.1 840,365 - pphA HEPCGN_04825 0.81 +0.7 840,394 + pphA HEPCGN_04825 0.85 +0.7 840,395 - pphA HEPCGN_04825 0.85 +0.7 840,395 - pphA HEPCGN_04825 0.85 -0.7 840,434 + +0.6 840,437 - +0.5 840,437 - +1.3 840,488 + -0.3 840,533 + yebW HEPCGN_04830 0.15 -1.4 840,534 - yebW HEPCGN_04830 0.16 +0.3 840,586 + yebW HEPCGN_04830 0.34 +1.4 840,587 - yebW HEPCGN_04830 0.35 +0.7 840,591 + yebW HEPCGN_04830 0.36 +0.4 840,655 - yebW HEPCGN_04830 0.59 +0.2 840,877 - yebV HEPCGN_04835 0.38 -0.2 840,877 - yebV HEPCGN_04835 0.38 -0.7 840,909 + yebV HEPCGN_04835 0.51 -0.2 840,913 + yebV HEPCGN_04835 0.53 +0.3 841,088 + -0.3 841,259 - +0.9 841,271 - +0.9 841,407 + rsmF HEPCGN_04840 0.18 +0.7 841,616 + rsmF HEPCGN_04840 0.33 +0.1 841,630 + rsmF HEPCGN_04840 0.34 -1.4 841,735 - rsmF HEPCGN_04840 0.41 -0.5 841,735 - rsmF HEPCGN_04840 0.41 +0.1 841,788 - rsmF HEPCGN_04840 0.45 -0.8 841,873 + rsmF HEPCGN_04840 0.51 -0.9 842,076 + rsmF HEPCGN_04840 0.65 -1.5 842,108 - rsmF HEPCGN_04840 0.67 +2.2 842,289 - rsmF HEPCGN_04840 0.79 -1.0 842,449 - +1.3 842,588 + +0.4 842,589 - -0.3 842,618 + -0.7 842,823 - -0.2 843,044 - yebT HEPCGN_04845 0.15 -0.1 843,076 + yebT HEPCGN_04845 0.16 -0.4 843,142 - yebT HEPCGN_04845 0.18 -0.1 843,240 + yebT HEPCGN_04845 0.22 +0.2 843,241 - yebT HEPCGN_04845 0.22 +0.1 843,424 - yebT HEPCGN_04845 0.29 +0.1 843,424 - yebT HEPCGN_04845 0.29 +0.4 843,430 + yebT HEPCGN_04845 0.29 +0.4 843,484 + yebT HEPCGN_04845 0.31 +0.4 843,485 - yebT HEPCGN_04845 0.31 +0.0
Or see this region's nucleotide sequence