Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_04680 and yobI are separated by 70 nucleotides yobI and ruvA are separated by 138 nucleotides ruvA and ruvB are separated by 8 nucleotides ruvB and znuB are separated by 147 nucleotides znuB and znuC overlap by 4 nucleotides
HEPCGN_04680: HEPCGN_04680 - Protein, at 815,955 to 816,557
_04680
HEPCGN_04685: yobI - Uncharacterized protein YobI, at 816,628 to 816,693
yobI
HEPCGN_04690: ruvA - Holliday junction branch migration protein RuvA, at 816,832 to 817,443
ruvA
HEPCGN_04695: ruvB - Holliday junction branch migration DNA helicase RuvB, at 817,452 to 818,462
ruvB
HEPCGN_04700: znuB - zinc ABC transporter permease subunit ZnuB, at 818,610 to 819,395
znuB
HEPCGN_04705: znuC - zinc ABC transporter ATP-binding protein ZnuC, at 819,392 to 820,147
znuC
Position (kb) 817
818
819 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 816.503 kb on + strand at 816.503 kb on + strand at 816.504 kb on - strand at 816.504 kb on - strand at 816.639 kb on + strand, within yobI at 817.542 kb on + strand at 818.022 kb on + strand, within ruvB at 818.024 kb on + strand, within ruvB at 818.461 kb on - strand at 818.461 kb on - strand at 818.531 kb on - strand at 818.558 kb on + strand at 818.558 kb on + strand at 818.612 kb on - strand at 818.793 kb on - strand, within znuB at 819.009 kb on - strand, within znuB at 819.056 kb on - strand, within znuB at 819.093 kb on - strand, within znuB at 819.141 kb on + strand, within znuB at 819.180 kb on + strand, within znuB at 819.224 kb on - strand, within znuB at 819.287 kb on + strand, within znuB at 819.299 kb on - strand, within znuB at 819.306 kb on - strand, within znuB at 819.452 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 816,503 + +0.6 816,503 + -2.4 816,504 - +0.0 816,504 - -0.8 816,639 + yobI HEPCGN_04685 0.17 -3.0 817,542 + +0.1 818,022 + ruvB HEPCGN_04695 0.56 +0.9 818,024 + ruvB HEPCGN_04695 0.57 -1.7 818,461 - -0.1 818,461 - +0.4 818,531 - -0.7 818,558 + -0.7 818,558 + +1.1 818,612 - -0.0 818,793 - znuB HEPCGN_04700 0.23 +0.2 819,009 - znuB HEPCGN_04700 0.51 -0.7 819,056 - znuB HEPCGN_04700 0.57 +0.7 819,093 - znuB HEPCGN_04700 0.61 -0.0 819,141 + znuB HEPCGN_04700 0.68 +0.4 819,180 + znuB HEPCGN_04700 0.73 +1.4 819,224 - znuB HEPCGN_04700 0.78 +0.5 819,287 + znuB HEPCGN_04700 0.86 -1.5 819,299 - znuB HEPCGN_04700 0.88 -0.1 819,306 - znuB HEPCGN_04700 0.89 -0.0 819,452 - +0.5
Or see this region's nucleotide sequence