Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_04435 and HEPCGN_04440 are separated by 29 nucleotides HEPCGN_04440 and xerD are separated by 131 nucleotides xerD and yecA are separated by 356 nucleotides
HEPCGN_04435: HEPCGN_04435 - Putative transmembrane protein, at 771,941 to 772,591
_04435
HEPCGN_04440: HEPCGN_04440 - DUF2511 domain-containing protein, at 772,621 to 772,968
_04440
HEPCGN_04445: xerD - integrase, at 773,100 to 773,975
xerD
HEPCGN_04450: yecA - UPF0149 family protein YecA, at 774,332 to 774,997
yecA
Position (kb) 773
774 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 772.138 kb on + strand, within HEPCGN_04435 at 772.198 kb on + strand, within HEPCGN_04435 at 772.208 kb on - strand, within HEPCGN_04435 at 772.285 kb on + strand, within HEPCGN_04435 at 772.296 kb on + strand, within HEPCGN_04435 at 772.296 kb on + strand, within HEPCGN_04435 at 772.303 kb on - strand, within HEPCGN_04435 at 772.360 kb on + strand, within HEPCGN_04435 at 772.394 kb on - strand, within HEPCGN_04435 at 772.643 kb on + strand at 772.737 kb on + strand, within HEPCGN_04440 at 772.801 kb on - strand, within HEPCGN_04440 at 772.875 kb on + strand, within HEPCGN_04440 at 772.893 kb on + strand, within HEPCGN_04440 at 772.938 kb on + strand at 772.956 kb on - strand at 772.963 kb on - strand at 773.181 kb on + strand at 773.288 kb on + strand, within xerD at 773.376 kb on + strand, within xerD at 773.380 kb on + strand, within xerD at 773.380 kb on + strand, within xerD at 773.380 kb on + strand, within xerD at 773.381 kb on - strand, within xerD at 773.491 kb on + strand, within xerD at 773.739 kb on + strand, within xerD at 773.763 kb on - strand, within xerD at 773.797 kb on + strand, within xerD at 773.891 kb on - strand at 773.999 kb on + strand at 774.222 kb on + strand at 774.267 kb on + strand at 774.290 kb on + strand at 774.290 kb on + strand at 774.290 kb on + strand at 774.291 kb on - strand at 774.393 kb on - strand at 774.393 kb on - strand at 774.578 kb on - strand, within yecA at 774.692 kb on + strand, within yecA at 774.693 kb on - strand, within yecA at 774.694 kb on + strand, within yecA at 774.694 kb on + strand, within yecA at 774.834 kb on + strand, within yecA at 774.834 kb on + strand, within yecA at 774.864 kb on + strand, within yecA at 774.864 kb on + strand, within yecA at 774.872 kb on + strand, within yecA at 774.872 kb on + strand, within yecA
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 772,138 + HEPCGN_04435 0.30 +1.3 772,198 + HEPCGN_04435 0.39 +0.0 772,208 - HEPCGN_04435 0.41 -0.1 772,285 + HEPCGN_04435 0.53 -0.9 772,296 + HEPCGN_04435 0.55 +0.1 772,296 + HEPCGN_04435 0.55 +0.9 772,303 - HEPCGN_04435 0.56 +0.5 772,360 + HEPCGN_04435 0.64 -0.6 772,394 - HEPCGN_04435 0.70 +1.0 772,643 + +0.4 772,737 + HEPCGN_04440 0.33 +0.5 772,801 - HEPCGN_04440 0.52 -1.4 772,875 + HEPCGN_04440 0.73 -0.4 772,893 + HEPCGN_04440 0.78 +0.0 772,938 + -0.4 772,956 - +1.0 772,963 - +2.9 773,181 + +0.1 773,288 + xerD HEPCGN_04445 0.21 -0.3 773,376 + xerD HEPCGN_04445 0.32 -0.0 773,380 + xerD HEPCGN_04445 0.32 -1.3 773,380 + xerD HEPCGN_04445 0.32 +0.1 773,380 + xerD HEPCGN_04445 0.32 -2.2 773,381 - xerD HEPCGN_04445 0.32 -0.3 773,491 + xerD HEPCGN_04445 0.45 -0.6 773,739 + xerD HEPCGN_04445 0.73 +0.0 773,763 - xerD HEPCGN_04445 0.76 -0.2 773,797 + xerD HEPCGN_04445 0.80 -2.2 773,891 - -1.4 773,999 + +0.2 774,222 + -0.1 774,267 + -0.2 774,290 + +0.4 774,290 + -1.1 774,290 + +0.3 774,291 - -0.8 774,393 - +0.5 774,393 - +0.1 774,578 - yecA HEPCGN_04450 0.37 +1.0 774,692 + yecA HEPCGN_04450 0.54 +0.4 774,693 - yecA HEPCGN_04450 0.54 +1.0 774,694 + yecA HEPCGN_04450 0.54 -2.5 774,694 + yecA HEPCGN_04450 0.54 +1.2 774,834 + yecA HEPCGN_04450 0.75 -0.7 774,834 + yecA HEPCGN_04450 0.75 +0.6 774,864 + yecA HEPCGN_04450 0.80 +1.4 774,864 + yecA HEPCGN_04450 0.80 +0.8 774,872 + yecA HEPCGN_04450 0.81 -0.7 774,872 + yecA HEPCGN_04450 0.81 -1.1
Or see this region's nucleotide sequence