Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt marR and HEPCGN_04390 overlap by 4 nucleotides HEPCGN_04390 and HEPCGN_04395 are separated by 23 nucleotides HEPCGN_04395 and HEPCGN_04400 are separated by 92 nucleotides HEPCGN_04400 and HEPCGN_04405 overlap by 4 nucleotides HEPCGN_04405 and HEPCGN_04410 are separated by 11 nucleotides HEPCGN_04410 and HEPCGN_04415 are separated by 10 nucleotides HEPCGN_04415 and HEPCGN_04420 are separated by 21 nucleotides HEPCGN_04420 and HEPCGN_04425 are separated by 71 nucleotides
HEPCGN_04385: marR - MarR family transcriptional regulator, at 768,995 to 769,261
marR
HEPCGN_04390: HEPCGN_04390 - hypothetical protein, at 769,258 to 769,461
_04390
HEPCGN_04395: HEPCGN_04395 - Phage protein, at 769,485 to 769,901
_04395
HEPCGN_04400: HEPCGN_04400 - Membrane protein, at 769,994 to 770,107
_04400
HEPCGN_04405: HEPCGN_04405 - DUF4754 domain-containing protein, at 770,104 to 770,346
_04405
HEPCGN_04410: HEPCGN_04410 - hypothetical protein, at 770,358 to 770,636
_04410
HEPCGN_04415: HEPCGN_04415 - DUF4761 domain-containing protein, at 770,647 to 770,997
_04415
HEPCGN_04420: HEPCGN_04420 - DNA-binding protein, at 771,019 to 771,222
_04420
HEPCGN_04425: HEPCGN_04425 - hypothetical protein, at 771,294 to 771,431
_04425
Position (kb) 770
771 Strain fitness (log2 ratio) -2
-1
0
1
2 at 769.177 kb on + strand, within marR at 769.178 kb on - strand, within marR at 769.178 kb on - strand, within marR at 769.178 kb on - strand, within marR at 769.178 kb on - strand, within marR at 769.222 kb on + strand, within marR at 769.245 kb on + strand at 769.246 kb on - strand at 769.277 kb on - strand at 769.322 kb on + strand, within HEPCGN_04390 at 769.340 kb on + strand, within HEPCGN_04390 at 769.340 kb on + strand, within HEPCGN_04390 at 769.340 kb on + strand, within HEPCGN_04390 at 769.341 kb on - strand, within HEPCGN_04390 at 769.341 kb on - strand, within HEPCGN_04390 at 769.341 kb on - strand, within HEPCGN_04390 at 769.487 kb on - strand at 769.487 kb on - strand at 769.524 kb on + strand at 769.600 kb on + strand, within HEPCGN_04395 at 769.715 kb on + strand, within HEPCGN_04395 at 769.904 kb on + strand at 769.905 kb on - strand at 769.970 kb on + strand at 770.219 kb on + strand, within HEPCGN_04405 at 770.360 kb on - strand at 770.518 kb on + strand, within HEPCGN_04410 at 770.518 kb on + strand, within HEPCGN_04410 at 770.575 kb on - strand, within HEPCGN_04410 at 770.575 kb on - strand, within HEPCGN_04410 at 770.648 kb on + strand at 770.648 kb on + strand at 770.907 kb on + strand, within HEPCGN_04415 at 770.907 kb on + strand, within HEPCGN_04415 at 770.908 kb on - strand, within HEPCGN_04415 at 770.910 kb on + strand, within HEPCGN_04415 at 770.910 kb on + strand, within HEPCGN_04415 at 770.950 kb on + strand, within HEPCGN_04415 at 770.979 kb on + strand at 771.147 kb on + strand, within HEPCGN_04420 at 771.148 kb on - strand, within HEPCGN_04420 at 771.178 kb on + strand, within HEPCGN_04420 at 771.182 kb on + strand, within HEPCGN_04420 at 771.183 kb on - strand, within HEPCGN_04420 at 771.183 kb on - strand, within HEPCGN_04420 at 771.201 kb on + strand, within HEPCGN_04420 at 771.211 kb on + strand at 771.213 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 769,177 + marR HEPCGN_04385 0.68 +0.1 769,178 - marR HEPCGN_04385 0.69 -1.5 769,178 - marR HEPCGN_04385 0.69 -1.8 769,178 - marR HEPCGN_04385 0.69 +2.4 769,178 - marR HEPCGN_04385 0.69 -0.5 769,222 + marR HEPCGN_04385 0.85 +1.1 769,245 + +2.4 769,246 - -0.1 769,277 - -2.4 769,322 + HEPCGN_04390 0.31 -1.5 769,340 + HEPCGN_04390 0.40 +0.6 769,340 + HEPCGN_04390 0.40 -0.3 769,340 + HEPCGN_04390 0.40 -0.4 769,341 - HEPCGN_04390 0.41 -0.3 769,341 - HEPCGN_04390 0.41 -0.0 769,341 - HEPCGN_04390 0.41 -0.9 769,487 - -1.6 769,487 - -1.1 769,524 + -0.2 769,600 + HEPCGN_04395 0.28 -0.2 769,715 + HEPCGN_04395 0.55 -0.7 769,904 + +0.6 769,905 - -0.0 769,970 + +0.4 770,219 + HEPCGN_04405 0.47 -0.5 770,360 - -2.0 770,518 + HEPCGN_04410 0.57 +0.5 770,518 + HEPCGN_04410 0.57 -0.8 770,575 - HEPCGN_04410 0.78 +0.9 770,575 - HEPCGN_04410 0.78 -1.0 770,648 + -0.0 770,648 + +0.4 770,907 + HEPCGN_04415 0.74 -2.0 770,907 + HEPCGN_04415 0.74 +0.0 770,908 - HEPCGN_04415 0.74 +0.7 770,910 + HEPCGN_04415 0.75 -0.1 770,910 + HEPCGN_04415 0.75 +0.9 770,950 + HEPCGN_04415 0.86 +0.0 770,979 + -0.6 771,147 + HEPCGN_04420 0.63 -0.9 771,148 - HEPCGN_04420 0.63 +0.0 771,178 + HEPCGN_04420 0.78 -0.1 771,182 + HEPCGN_04420 0.80 -0.3 771,183 - HEPCGN_04420 0.80 +0.0 771,183 - HEPCGN_04420 0.80 +0.5 771,201 + HEPCGN_04420 0.89 +0.2 771,211 + -0.2 771,213 + +0.1
Or see this region's nucleotide sequence