Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_03900 and zinT are separated by 669 nucleotides zinT and msrQ are separated by 257 nucleotides msrQ and msrP are separated by 0 nucleotides
HEPCGN_03900: HEPCGN_03900 - tRNA-Xxx, at 686,707 to 686,788
_03900
HEPCGN_03905: zinT - metal-binding protein ZinT, at 687,458 to 688,108
zinT
HEPCGN_03910: msrQ - protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 688,366 to 689,001
msrQ
HEPCGN_03915: msrP - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 689,002 to 690,006
msrP
Position (kb) 687
688
689 Strain fitness (log2 ratio) -2
-1
0
1 at 686.486 kb on - strand at 686.505 kb on - strand at 686.642 kb on + strand at 686.679 kb on + strand at 686.680 kb on - strand at 686.847 kb on + strand at 686.847 kb on + strand at 686.958 kb on + strand at 687.278 kb on + strand at 687.278 kb on + strand at 687.298 kb on - strand at 687.436 kb on - strand at 687.853 kb on + strand, within zinT at 687.967 kb on + strand, within zinT at 687.986 kb on - strand, within zinT at 688.094 kb on - strand at 688.127 kb on + strand at 688.128 kb on - strand at 688.203 kb on - strand at 688.203 kb on - strand at 688.436 kb on - strand, within msrQ at 688.466 kb on + strand, within msrQ at 688.648 kb on + strand, within msrQ at 688.666 kb on + strand, within msrQ at 688.678 kb on + strand, within msrQ at 688.679 kb on - strand, within msrQ at 688.682 kb on - strand, within msrQ at 688.756 kb on + strand, within msrQ at 688.822 kb on + strand, within msrQ
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 686,486 - +0.3 686,505 - -0.4 686,642 + +0.4 686,679 + +0.5 686,680 - +0.7 686,847 + +1.1 686,847 + -1.2 686,958 + -0.1 687,278 + -1.7 687,278 + +1.7 687,298 - -0.1 687,436 - +1.6 687,853 + zinT HEPCGN_03905 0.61 -0.7 687,967 + zinT HEPCGN_03905 0.78 -0.9 687,986 - zinT HEPCGN_03905 0.81 -2.0 688,094 - -2.6 688,127 + +0.2 688,128 - +0.6 688,203 - -0.8 688,203 - +0.0 688,436 - msrQ HEPCGN_03910 0.11 -0.0 688,466 + msrQ HEPCGN_03910 0.16 +0.3 688,648 + msrQ HEPCGN_03910 0.44 -0.2 688,666 + msrQ HEPCGN_03910 0.47 -0.0 688,678 + msrQ HEPCGN_03910 0.49 -0.1 688,679 - msrQ HEPCGN_03910 0.49 +0.1 688,682 - msrQ HEPCGN_03910 0.50 +0.6 688,756 + msrQ HEPCGN_03910 0.61 +0.9 688,822 + msrQ HEPCGN_03910 0.72 -0.2
Or see this region's nucleotide sequence