Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_03810 and HEPCGN_03815 are separated by 76 nucleotides HEPCGN_03815 and HEPCGN_03820 are separated by 8 nucleotides HEPCGN_03820 and HEPCGN_03825 overlap by 1 nucleotides HEPCGN_03825 and HEPCGN_03830 overlap by 4 nucleotides
HEPCGN_03810: HEPCGN_03810 - phage major capsid protein, at 669,362 to 670,579
_03810
HEPCGN_03815: HEPCGN_03815 - head-tail connector protein, at 670,656 to 670,973
_03815
HEPCGN_03820: HEPCGN_03820 - phage head closure protein, at 670,982 to 671,320
_03820
HEPCGN_03825: HEPCGN_03825 - Bacteriophage HK97-gp10, putative tail-component, at 671,320 to 671,766
_03825
HEPCGN_03830: HEPCGN_03830 - DUF3168 domain-containing protein, at 671,763 to 672,107
_03830
Position (kb) 670
671 Strain fitness (log2 ratio) -2
-1
0
1
2 at 669.745 kb on + strand, within HEPCGN_03810 at 669.745 kb on + strand, within HEPCGN_03810 at 669.955 kb on + strand, within HEPCGN_03810 at 669.955 kb on + strand, within HEPCGN_03810 at 670.028 kb on + strand, within HEPCGN_03810 at 670.239 kb on - strand, within HEPCGN_03810 at 670.274 kb on - strand, within HEPCGN_03810 at 670.274 kb on - strand, within HEPCGN_03810 at 670.362 kb on - strand, within HEPCGN_03810 at 670.436 kb on - strand, within HEPCGN_03810 at 670.450 kb on + strand, within HEPCGN_03810 at 670.454 kb on + strand, within HEPCGN_03810 at 670.454 kb on + strand, within HEPCGN_03810 at 670.454 kb on + strand, within HEPCGN_03810 at 670.455 kb on - strand, within HEPCGN_03810 at 670.596 kb on + strand at 670.597 kb on - strand at 670.727 kb on - strand, within HEPCGN_03815 at 670.737 kb on + strand, within HEPCGN_03815 at 670.788 kb on + strand, within HEPCGN_03815 at 670.829 kb on + strand, within HEPCGN_03815 at 670.830 kb on - strand, within HEPCGN_03815 at 670.831 kb on + strand, within HEPCGN_03815 at 670.832 kb on - strand, within HEPCGN_03815 at 670.999 kb on - strand at 671.011 kb on - strand at 671.080 kb on + strand, within HEPCGN_03820 at 671.081 kb on - strand, within HEPCGN_03820 at 671.098 kb on + strand, within HEPCGN_03820 at 671.122 kb on - strand, within HEPCGN_03820 at 671.227 kb on + strand, within HEPCGN_03820 at 671.248 kb on - strand, within HEPCGN_03820 at 671.248 kb on - strand, within HEPCGN_03820 at 671.248 kb on - strand, within HEPCGN_03820 at 671.293 kb on - strand at 671.742 kb on + strand at 671.757 kb on - strand at 671.757 kb on - strand at 671.823 kb on + strand, within HEPCGN_03830 at 671.823 kb on + strand, within HEPCGN_03830 at 671.937 kb on - strand, within HEPCGN_03830
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 669,745 + HEPCGN_03810 0.31 +0.0 669,745 + HEPCGN_03810 0.31 +0.1 669,955 + HEPCGN_03810 0.49 -0.3 669,955 + HEPCGN_03810 0.49 -1.2 670,028 + HEPCGN_03810 0.55 +0.7 670,239 - HEPCGN_03810 0.72 -0.3 670,274 - HEPCGN_03810 0.75 -1.0 670,274 - HEPCGN_03810 0.75 -0.9 670,362 - HEPCGN_03810 0.82 -0.7 670,436 - HEPCGN_03810 0.88 +0.3 670,450 + HEPCGN_03810 0.89 -1.9 670,454 + HEPCGN_03810 0.90 +0.3 670,454 + HEPCGN_03810 0.90 -1.0 670,454 + HEPCGN_03810 0.90 +0.3 670,455 - HEPCGN_03810 0.90 -0.5 670,596 + +0.2 670,597 - -0.1 670,727 - HEPCGN_03815 0.22 -0.8 670,737 + HEPCGN_03815 0.25 +1.2 670,788 + HEPCGN_03815 0.42 -1.5 670,829 + HEPCGN_03815 0.54 -0.3 670,830 - HEPCGN_03815 0.55 -1.4 670,831 + HEPCGN_03815 0.55 -1.5 670,832 - HEPCGN_03815 0.55 +0.5 670,999 - +1.1 671,011 - -1.7 671,080 + HEPCGN_03820 0.29 -0.0 671,081 - HEPCGN_03820 0.29 -0.2 671,098 + HEPCGN_03820 0.34 +0.6 671,122 - HEPCGN_03820 0.41 -0.5 671,227 + HEPCGN_03820 0.72 -0.0 671,248 - HEPCGN_03820 0.78 -1.1 671,248 - HEPCGN_03820 0.78 +1.8 671,248 - HEPCGN_03820 0.78 -0.7 671,293 - -1.9 671,742 + +0.4 671,757 - +0.1 671,757 - -1.2 671,823 + HEPCGN_03830 0.17 -1.0 671,823 + HEPCGN_03830 0.17 +0.8 671,937 - HEPCGN_03830 0.50 +0.1
Or see this region's nucleotide sequence