Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_03635 and dicB overlap by 4 nucleotides dicB and ydfC are separated by 567 nucleotides ydfC and HEPCGN_03655 are separated by 92 nucleotides HEPCGN_03655 and HEPCGN_03660 are separated by 306 nucleotides
HEPCGN_03635: HEPCGN_03635 - DUF1482 domain-containing protein, at 650,055 to 650,246
_03635
HEPCGN_03640: dicB - cell division inhibition protein DicB, at 650,243 to 650,431
dicB
HEPCGN_03650: ydfC - Uncharacterized protein YdfC, at 650,999 to 651,217
ydfC
HEPCGN_03655: HEPCGN_03655 - hypothetical protein, at 651,310 to 651,510
_03655
HEPCGN_03660: HEPCGN_03660 - transcriptional regulator, at 651,817 to 652,224
_03660
Position (kb) 650
651
652 Strain fitness (log2 ratio) -1
0
1
2
3 at 650.020 kb on + strand at 650.187 kb on - strand, within HEPCGN_03635 at 650.755 kb on - strand at 650.830 kb on + strand at 650.841 kb on + strand at 650.841 kb on + strand at 650.842 kb on - strand at 650.887 kb on + strand at 651.013 kb on + strand at 651.014 kb on - strand at 651.062 kb on - strand, within ydfC at 651.163 kb on - strand, within ydfC at 651.179 kb on - strand, within ydfC at 651.251 kb on - strand at 651.272 kb on - strand at 651.272 kb on - strand at 651.428 kb on + strand, within HEPCGN_03655 at 651.428 kb on + strand, within HEPCGN_03655 at 651.474 kb on + strand, within HEPCGN_03655 at 651.508 kb on + strand at 651.508 kb on + strand at 651.525 kb on + strand at 651.526 kb on - strand at 651.547 kb on + strand at 651.571 kb on - strand at 651.576 kb on + strand at 651.577 kb on - strand at 651.578 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 650,020 + +2.0 650,187 - HEPCGN_03635 0.69 +0.1 650,755 - -0.6 650,830 + +0.3 650,841 + -0.2 650,841 + -0.4 650,842 - +0.3 650,887 + +0.1 651,013 + +0.4 651,014 - -0.4 651,062 - ydfC HEPCGN_03650 0.29 -1.1 651,163 - ydfC HEPCGN_03650 0.75 -0.4 651,179 - ydfC HEPCGN_03650 0.82 -0.9 651,251 - -0.5 651,272 - -0.4 651,272 - +1.0 651,428 + HEPCGN_03655 0.59 -1.0 651,428 + HEPCGN_03655 0.59 +1.2 651,474 + HEPCGN_03655 0.82 +0.2 651,508 + +0.1 651,508 + +1.1 651,525 + +0.3 651,526 - -0.3 651,547 + +0.4 651,571 - +0.0 651,576 + -0.2 651,577 - +3.2 651,578 + -1.4
Or see this region's nucleotide sequence