Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydcZ and HEPCGN_03405 are separated by 53 nucleotides HEPCGN_03405 and HEPCGN_03410 are separated by 13 nucleotides
HEPCGN_03400: ydcZ - Putative inner membrane exporter, YdcZ, at 583,200 to 584,165
ydcZ
HEPCGN_03405: HEPCGN_03405 - cytoplasmic protein, at 584,219 to 584,977
_03405
HEPCGN_03410: HEPCGN_03410 - DeoR/GlpR transcriptional regulator, at 584,991 to 586,205
_03410
Position (kb) 584
585 Strain fitness (log2 ratio) -1
0
1 at 583.248 kb on - strand at 583.303 kb on + strand, within ydcZ at 583.330 kb on - strand, within ydcZ at 583.393 kb on - strand, within ydcZ at 583.437 kb on + strand, within ydcZ at 583.437 kb on + strand, within ydcZ at 583.438 kb on - strand, within ydcZ at 583.479 kb on + strand, within ydcZ at 583.501 kb on - strand, within ydcZ at 583.514 kb on + strand, within ydcZ at 583.514 kb on + strand, within ydcZ at 583.518 kb on + strand, within ydcZ at 583.531 kb on - strand, within ydcZ at 583.662 kb on + strand, within ydcZ at 583.725 kb on + strand, within ydcZ at 583.757 kb on - strand, within ydcZ at 583.798 kb on - strand, within ydcZ at 583.812 kb on + strand, within ydcZ at 583.995 kb on - strand, within ydcZ at 584.071 kb on - strand at 584.317 kb on + strand, within HEPCGN_03405 at 584.646 kb on + strand, within HEPCGN_03405 at 584.719 kb on + strand, within HEPCGN_03405 at 584.812 kb on + strand, within HEPCGN_03405 at 584.874 kb on + strand, within HEPCGN_03405 at 584.878 kb on + strand, within HEPCGN_03405 at 585.195 kb on - strand, within HEPCGN_03410 at 585.446 kb on + strand, within HEPCGN_03410 at 585.605 kb on - strand, within HEPCGN_03410 at 585.939 kb on - strand, within HEPCGN_03410
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 583,248 - -0.6 583,303 + ydcZ HEPCGN_03400 0.11 +1.1 583,330 - ydcZ HEPCGN_03400 0.13 -0.1 583,393 - ydcZ HEPCGN_03400 0.20 +1.3 583,437 + ydcZ HEPCGN_03400 0.25 +0.6 583,437 + ydcZ HEPCGN_03400 0.25 -0.1 583,438 - ydcZ HEPCGN_03400 0.25 -0.6 583,479 + ydcZ HEPCGN_03400 0.29 -0.4 583,501 - ydcZ HEPCGN_03400 0.31 +1.0 583,514 + ydcZ HEPCGN_03400 0.33 +0.2 583,514 + ydcZ HEPCGN_03400 0.33 +1.3 583,518 + ydcZ HEPCGN_03400 0.33 +0.2 583,531 - ydcZ HEPCGN_03400 0.34 -0.0 583,662 + ydcZ HEPCGN_03400 0.48 +1.0 583,725 + ydcZ HEPCGN_03400 0.54 +0.2 583,757 - ydcZ HEPCGN_03400 0.58 +0.6 583,798 - ydcZ HEPCGN_03400 0.62 +0.2 583,812 + ydcZ HEPCGN_03400 0.63 +0.6 583,995 - ydcZ HEPCGN_03400 0.82 -1.4 584,071 - +0.9 584,317 + HEPCGN_03405 0.13 -1.2 584,646 + HEPCGN_03405 0.56 -0.4 584,719 + HEPCGN_03405 0.66 -0.3 584,812 + HEPCGN_03405 0.78 +0.1 584,874 + HEPCGN_03405 0.86 -0.8 584,878 + HEPCGN_03405 0.87 -0.2 585,195 - HEPCGN_03410 0.17 +0.2 585,446 + HEPCGN_03410 0.37 +0.9 585,605 - HEPCGN_03410 0.51 -1.2 585,939 - HEPCGN_03410 0.78 +0.2
Or see this region's nucleotide sequence